Cluster no. 161
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Cluster is part of supercluster: 36
Cluster characteristics:
| size |
762 |
| size_real |
762 |
| ecount |
9648 |
| supercluster |
36 |
| annotations_summary |
|
| pair_completeness |
0.708520179372197 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0183727034120735 |
| satellite_probability |
1.28821444368064e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
257 |
| S4 |
263 |
| S6 |
242 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
1210 |
1170 |
1040 |
| S4 |
1170 |
1070 |
1030 |
| S6 |
1040 |
1030 |
892 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.994 |
1.010 |
0.994 |
| S4 |
1.010 |
0.966 |
1.020 |
| S6 |
0.994 |
1.020 |
0.981 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 127 |
33 |
0.142 |
| 144 |
12 |
0.086 |
| 26500 |
2 |
0.0303 |
| 14 |
1 |
0.00082 |
| 16 |
1 |
0.000886 |
| 63 |
1 |
0.00083 |
| 90 |
1 |
0.00181 |
| 98 |
1 |
0.00122 |
| 107 |
1 |
0.00372 |
| 6950 |
1 |
0.0152 |
| 42500 |
1 |
0.0152 |
|
CL161 ----> CL127
No. of shared pairs: :33
CL161 ----> CL144
No. of shared pairs: :12