Cluster no. 160

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Cluster is part of supercluster: 70

Cluster characteristics:

size 762
size_real 762
ecount 7027
supercluster 70
annotations_summary 97.64% organelle/plastid
0.39% organelle/mitochondria
0.13% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness 0.919395465994962
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00131233595800525
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 264
S4 246
S6 252
comparative analysis - number of edges between species:
S5 S4 S6
S5 821 793 798
S4 793 733 734
S6 798 734 825
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.992 1.020 0.986
S4 1.020 1.010 0.968
S6 0.986 0.968 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 0.0039
plastid plastid 744 0.9764
hAT hAT-TPase hAT hAT-TPase 1 0.0013

clusters with similarity:

Cluster Number of similarity hits
131 3
145 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
131 11 0.338
145 9 0.265
2 1 0.000322
29 1 0.000451
149 1 0.00599
6290 1 0.0556
24600 1 0.0588

CL160 ----> CL131

image

No. of shared pairs: :11