Cluster no. 158

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Cluster is part of supercluster: 68

Cluster characteristics:

size 777
size_real 777
ecount 7479
supercluster 68
annotations_summary
pair_completeness 0.681818181818182
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.262548262548263
satellite_probability 3.89783901298005e-11
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 293
S4 246
S6 238
comparative analysis - number of edges between species:
S5 S4 S6
S5 1000 954 820
S4 954 843 726
S6 820 726 630
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.973 1.020 1.010
S4 1.020 0.990 0.989
S6 1.010 0.989 0.995

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
117 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
117 49 0.0865
170 5 0.0309
37 4 0.00383
7 3 0.00135
16 2 0.00176
54 2 0.00185
1980 2 0.0258
2900 2 0.0265
6630 2 0.0265
32 1 0.000718
35 1 0.000901
38 1 0.00168
58 1 0.000791
2300 1 0.0133
6650 1 0.0132
8180 1 0.0135
25200 1 0.0134
44300 1 0.0134
47100 1 0.0134

CL158 ----> CL117

image

No. of shared pairs: :49