Cluster no. 156

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 819
size_real 819
ecount 8640
supercluster 1
annotations_summary 0.12% organelle/plastid
pair_completeness 0.33605220228385
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.135531135531136
satellite_probability 4.13551589573074e-14
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 273
S4 285
S6 261
comparative analysis - number of edges between species:
S5 S4 S6
S5 897 942 914
S4 942 1160 1000
S6 914 1000 866
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.952 1.030
S4 0.952 1.040 1.000
S6 1.030 1.000 0.966

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0012

clusters with similarity:

Cluster Number of similarity hits
55 216

clusters connected through mates:

Cluster Number of shared
read pairs		 k
55 179 0.146
1640 3 0.0145
3330 3 0.0145
99 2 0.0023
2820 2 0.00969
4710 2 0.00971
10400 2 0.00976
11300 2 0.00976
36500 2 0.00978
39900 2 0.00978
42600 2 0.00978
10 1 0.000411
32 1 0.000657
46 1 0.000703
66 1 0.00125
134 1 0.00214
2500 1 0.00485
2520 1 0.00485
2800 1 0.00484
3690 1 0.00485
6800 1 0.00487
9460 1 0.0049
11100 1 0.00488
11200 1 0.0049
12300 1 0.00488
17200 1 0.00489
17600 1 0.00489
18600 1 0.00489
20000 1 0.00489
25500 1 0.00489
26700 1 0.00489
29200 1 0.00489
29600 1 0.00489
30500 1 0.00489
31500 1 0.00489
33000 1 0.00489
34400 1 0.00489
35900 1 0.00489
38300 1 0.00489
41100 1 0.00489
41600 1 0.00489
42600 1 0.00489
43900 1 0.00489
44100 1 0.00489
45200 1 0.00489
47000 1 0.00489

CL156 ----> CL55

image

No. of shared pairs: :179