Cluster no. 155

Go back to cluster table

Cluster is part of supercluster: 28

Cluster characteristics:

size 890
size_real 890
ecount 10666
supercluster 28
annotations_summary 26.52% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.11% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.827515400410678
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00112359550561798
satellite_probability 1.43574013326601e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 328
S4 291
S6 271
comparative analysis - number of edges between species:
S5 S4 S6
S5 1410 1260 1240
S4 1260 1120 1080
S6 1240 1080 984
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.984 0.996 1.020
S4 0.996 0.997 1.010
S6 1.020 1.010 0.963

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 236 0.2652
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0011

clusters with similarity:

Cluster Number of similarity hits
107 32

clusters connected through mates:

Cluster Number of shared
read pairs		 k
107 43 0.175
2750 7 0.154
2280 6 0.13
15 3 0.00297
1 1 0.000297
7 1 0.000457
10 1 0.00044
64 1 0.000912
84 1 0.00134
143 1 0.00435
455 1 0.0206

CL155 ----> CL107

image

No. of shared pairs: :43