Cluster no. 154

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Cluster is part of supercluster: 66

Cluster characteristics:

size 894
size_real 894
ecount 7381
supercluster 66
annotations_summary 98.55% organelle/plastid
0.22% organelle/mitochondria
pair_completeness 0.92258064516129
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00111856823266219
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 301
S4 297
S6 296
comparative analysis - number of edges between species:
S5 S4 S6
S5 854 822 825
S4 822 804 800
S6 825 800 828
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 1.000 0.992
S4 1.000 1.010 0.992
S6 0.992 0.992 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 0.0022
plastid plastid 881 0.9855

clusters with similarity:

Cluster Number of similarity hits
145 1
157 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
145 12 0.333
157 8 0.239
3 1 0.000453
27 1 0.00109
82 1 0.00141
162 1 0.0328
17500 1 0.0526

CL154 ----> CL145

image

No. of shared pairs: :12