Cluster no. 152

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Cluster is part of supercluster: 64

Cluster characteristics:

size 919
size_real 919
ecount 6639
supercluster 64
annotations_summary 99.24% organelle/plastid
0.44% organelle/mitochondria
0.11% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness 0.926624737945493
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00108813928182807
satellite_probability 1.56020511944627e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 281
S4 340
S6 298
comparative analysis - number of edges between species:
S5 S4 S6
S5 628 750 648
S4 750 949 784
S6 648 784 697
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.990 0.997
S4 0.990 1.020 0.985
S6 0.997 0.985 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 4 0.0044
plastid plastid 912 0.9924
Reina Ty3-GAG Reina Ty3-GAG 1 0.0011
Athila Ty3-RT Athila Ty3-RT 1 0.0011

clusters with similarity:

Cluster Number of similarity hits
116 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
116 13 0.23
131 7 0.206
56 1 0.00086
84 1 0.00139
87 1 0.00164
101 1 0.00222
20100 1 0.0541
31900 1 0.0541

CL152 ----> CL116

image

No. of shared pairs: :13