Cluster no. 151

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Cluster is part of supercluster: 63

Cluster characteristics:

size 922
size_real 922
ecount 15271
supercluster 63
annotations_summary 0.22% organelle/plastid
pair_completeness 0.617543859649123
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.12472885032538
satellite_probability 8.59422187357409e-16
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 307
S4 268
S6 347
comparative analysis - number of edges between species:
S5 S4 S6
S5 1740 1440 1930
S4 1440 1400 1620
S6 1930 1620 2140
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.966 1.010
S4 0.966 1.070 0.974
S6 1.010 0.974 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.0022

clusters with similarity:

Cluster Number of similarity hits
8 183
17 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
8 97 0.0455
17 9 0.00563
1900 5 0.0441
7340 3 0.027
5820 2 0.018
19300 2 0.0182
25100 2 0.0182
33400 2 0.0182
35100 2 0.0182
35200 2 0.0182
38800 2 0.0182
41400 2 0.0182
45600 2 0.0182
2 1 0.000312
30 1 0.00058
38 1 0.00158
85 1 0.00258
112 1 0.00138
115 1 0.00159
116 1 0.00676
2820 1 0.00901
4360 1 0.00905
7020 1 0.00901
12700 1 0.00913
15200 1 0.00909
22700 1 0.00909
38800 1 0.00909
40500 1 0.00909
41000 1 0.00909

CL151 ----> CL8

image

No. of shared pairs: :97