Cluster no. 150

Cluster no. 150

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Cluster is part of supercluster: 62

Cluster characteristics:

size	984
size_real	984
ecount	5878
supercluster	62
annotations_summary	0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness	0.308510638297872
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00101626016260163
satellite_probability	1.14260235015906e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	337
S4	332
S6	315

comparative analysis - number of edges between species:

	S5	S4	S6
S5	625	696	580
S4	696	773	685
S6	580	685	557

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.020	0.999	0.984
S4	0.999	0.979	1.030
S6	0.984	1.030	0.986

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatV Ty3-INT TatV Ty3-INT 1 0.001

clusters with similarity:

Cluster	Number of similarity hits

54	37
37	32
134	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

37	69	0.0561
54	57	0.045
134	14	0.0268
662	7	0.0259
1	4	0.00112
64	4	0.00304
814	3	0.0112
903	3	0.0112
5930	3	0.0115
16	2	0.00151
920	2	0.00746
2470	2	0.00759
4470	2	0.00765
7520	2	0.00765
10500	2	0.00765
14300	2	0.00766
24200	2	0.00766
37200	2	0.00766
7	1	0.000415
10	1	0.000402
13	1	0.000587
21	1	0.000399
22	1	0.000938
30	1	0.000533
41	1	0.000742
45	1	0.000787
47	1	0.000951
56	1	0.000711
71	1	0.00101
72	1	0.000799
76	1	0.00133
83	1	0.000739
85	1	0.00186
86	1	0.00116
87	1	0.00118
94	1	0.000937
95	1	0.00226
98	1	0.000987
103	1	0.00102
121	1	0.00154
132	1	0.00242
135	1	0.00237
142	1	0.00159
157	1	0.00363
226	1	0.00345
287	1	0.00356
306	1	0.00357
362	1	0.00359
877	1	0.00375
1080	1	0.0038
2140	1	0.0038
2180	1	0.00379
2260	1	0.0038
4370	1	0.00381
5170	1	0.00382
5680	1	0.00383
6570	1	0.00382
7010	1	0.00382
7110	1	0.00383
7650	1	0.00382
8360	1	0.00382
8920	1	0.00382
10200	1	0.00382
11000	1	0.00382
12500	1	0.00382
13300	1	0.00382
16700	1	0.00383
17200	1	0.00383
17700	1	0.00383
18000	1	0.00383
18500	1	0.00383
21700	1	0.00383
23300	1	0.00383
26400	1	0.00383
26500	1	0.00383
29600	1	0.00383
30900	1	0.00383
35900	1	0.00383
36200	1	0.00383
39000	1	0.00383
40400	1	0.00383

CL150 ----> CL37

No. of shared pairs: :69

CL150 ----> CL54

No. of shared pairs: :57

CL150 ----> CL134

No. of shared pairs: :14