Cluster no. 149

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Cluster is part of supercluster: 61

Cluster characteristics:

size 1060
size_real 1060
ecount 4031
supercluster 61
annotations_summary 0.09% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.556534508076358
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.119811320754717
satellite_probability 2.49019549297955e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 302
S4 391
S6 367
comparative analysis - number of edges between species:
S5 S4 S6
S5 356 442 398
S4 442 607 476
S6 398 476 437
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.977 1.020
S4 0.977 1.050 0.959
S6 1.020 0.959 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00094
Tekay Ty3-INT Tekay Ty3-INT 1 0.00094

clusters with similarity:

Cluster Number of similarity hits
174 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
174 11 0.0541
327 9 0.0528
616 5 0.0313
2280 5 0.0325
71 3 0.00341
1720 3 0.0193
2210 3 0.0194
2240 3 0.0195
5330 3 0.0196
7820 3 0.0197
7 2 0.00087
19 2 0.00121
20 2 0.00111
22 2 0.00209
39 2 0.00223
59 2 0.00187
1600 2 0.0131
4020 2 0.013
4080 2 0.013
6870 2 0.0131
7330 2 0.0131
13900 2 0.0132
16300 2 0.0132
20200 2 0.0132
28300 2 0.0132
36800 2 0.0132
1 1 0.000288
4 1 0.000302
5 1 0.000423
8 1 0.00046
9 1 0.000779
10 1 0.00042
21 1 0.000418
27 1 0.000953
45 1 0.000861
46 1 0.00073
50 1 0.000961
76 1 0.00156
77 1 0.00105
87 1 0.00135
90 1 0.00157
100 1 0.0023
103 1 0.00114
106 1 0.00274
112 1 0.0013
114 1 0.0023
160 1 0.00599
368 1 0.00587
523 1 0.0061
760 1 0.00635
1570 1 0.00645
2360 1 0.00651
2740 1 0.00656
3740 1 0.00656
4010 1 0.00651
4320 1 0.00651
4420 1 0.00651
4440 1 0.00651
5720 1 0.00658
5960 1 0.00654
8580 1 0.0066
10600 1 0.00656
11200 1 0.0066
15500 1 0.00658
16200 1 0.00658
17000 1 0.00658
19100 1 0.00658
22700 1 0.00658
22900 1 0.00658
24500 1 0.00658
33600 1 0.00658
43900 1 0.00658
46300 1 0.00658
47700 1 0.00658

CL149 ----> CL174

image

No. of shared pairs: :11