Cluster no. 148

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Cluster is part of supercluster: 60

Cluster characteristics:

size 1077
size_real 1077
ecount 8280
supercluster 60
annotations_summary 100.00% organelle/plastid
0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
pair_completeness 0.93010752688172
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000928505106778087
satellite_probability 1.56020511944627e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 389
S4 317
S6 371
comparative analysis - number of edges between species:
S5 S4 S6
S5 1160 871 1010
S4 871 654 843
S6 1010 843 1020
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.040 1.000 0.955
S4 1.000 0.966 1.030
S6 0.955 1.030 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1077 1.0000
Athila Ty3-PROT Athila Ty3-PROT 2 0.0019

clusters with similarity:

Cluster Number of similarity hits
167 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
197 13 0.419
157 9 0.257
27900 2 0.0976
5 1 0.000448
86 1 0.00161
108 1 0.00131
15100 1 0.0488
30600 1 0.0488

CL148 ----> CL197

image

No. of shared pairs: :13