Cluster no. 147

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Cluster is part of supercluster: 59

Cluster characteristics:

size 1115
size_real 1115
ecount 3711
supercluster 59
annotations_summary 0.09% Class_I/LINE:LINE-RT
0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness 0.381660470879802
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0556053811659193
satellite_probability 9.80169315127058e-18
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 410
S4 348
S6 357
comparative analysis - number of edges between species:
S5 S4 S6
S5 498 404 448
S4 404 357 372
S6 448 372 408
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.979 1.000
S4 0.979 1.030 0.992
S6 1.000 0.992 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 1 9e-04
Ale Ty1-RH Ale Ty1-RH 1 9e-04

clusters connected through mates:

Cluster Number of shared
read pairs
k
206 17 0.0556
1490 6 0.0236
130 4 0.00704
2020 4 0.0158
1 2 0.00056
2 2 0.000599
73 2 0.00176
85 2 0.00378
1320 2 0.00786
1460 2 0.00784
1890 2 0.00791
3390 2 0.00792
5440 2 0.00795
7350 2 0.00795
8400 2 0.00797
15300 2 0.00798
24000 2 0.00798
35100 2 0.00798
36200 2 0.00798
41300 2 0.00798
42100 2 0.00798
47300 2 0.00798
47600 2 0.00798
7 1 0.000417
15 1 0.000821
17 1 0.000575
22 1 0.000947
27 1 0.000871
32 1 0.000638
36 1 0.000765
39 1 0.00101
40 1 0.000907
58 1 0.000695
61 1 0.000695
83 1 0.000745
87 1 0.00119
90 1 0.00136
92 1 0.00222
94 1 0.000947
103 1 0.00103
142 1 0.00161
153 1 0.00254
159 1 0.00211
392 1 0.00375
1520 1 0.00393
1890 1 0.00394
2270 1 0.00394
2950 1 0.00396
3560 1 0.004
4690 1 0.00398
10800 1 0.00398
11100 1 0.00398
11100 1 0.00398
11500 1 0.00398
16600 1 0.00399
22500 1 0.00399
25600 1 0.00399
26400 1 0.00399
26700 1 0.00399
28000 1 0.00399
32100 1 0.00399
37700 1 0.00399
39700 1 0.00399
48100 1 0.00399

CL147 ----> CL206

image

No. of shared pairs: :17