Cluster no. 146

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Cluster is part of supercluster: 58

Cluster characteristics:

size 1150
size_real 1150
ecount 8751
supercluster 58
annotations_summary 84.35% organelle/plastid
0.87% organelle/mitochondria
pair_completeness 0.919866444073456
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000869565217391304
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 411
S4 408
S6 331
comparative analysis - number of edges between species:
S5 S4 S6
S5 1170 1130 900
S4 1130 1080 868
S6 900 868 703
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.998 1.000 0.997
S4 1.000 0.998 0.998
S6 0.997 0.998 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 10 0.0087
plastid plastid 970 0.8435

clusters with similarity:

Cluster Number of similarity hits
116 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
116 12 0.19
177 7 0.222
3 1 0.000451
12 1 0.000361
51 1 0.000952
85 1 0.0033
92 1 0.00444
108 1 0.00131
118 1 0.0179
30300 1 0.04

CL146 ----> CL116

image

No. of shared pairs: :12