Cluster no. 144

Go back to cluster table

Cluster is part of supercluster: 56

Cluster characteristics:

size	1229
size_real	1229
ecount	9155
supercluster	56
annotations_summary	20.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 10.82% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 9.36% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 7.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 5.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT 0.16% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness	0.783744557329463
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00081366965012205
satellite_probability	3.89552186042479e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	438
S4	401
S6	390

comparative analysis - number of edges between species:

	S5	S4	S6
S5	1200	1020	1080
S4	1020	908	922
S6	1080	922	994

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.991	1.000
S4	0.991	1.020	0.987
S6	1.000	0.987	1.010

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-RT Ale Ty1-RT 2 0.0016

Athila Ty3-GAG Athila Ty3-GAG 87 0.0708

Athila Ty3-INT Athila Ty3-INT 255 0.2075

Athila Ty3-PROT Athila Ty3-PROT 63 0.0513

Athila Ty3-RH Athila Ty3-RH 115 0.0936

Athila Ty3-RT Athila Ty3-RT 133 0.1082

clusters with similarity:

Cluster	Number of similarity hits

161	2
1	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

161	12	0.086
257	10	0.105
45	3	0.00277
1	2	0.000589
7	2	9e-04
10	2	0.000868
27	2	0.00206
57	2	0.00168
24700	2	0.0265
11	1	0.000454
12	1	0.000354
30	1	0.000592
31	1	0.000814
32	1	0.000718
47	1	0.00116
49	1	0.000829
51	1	0.000909
55	1	0.000914
56	1	0.00082
61	1	0.000791
63	1	0.000824
73	1	0.00104
76	1	0.00177
77	1	0.00114
80	1	0.00387
127	1	0.00412
132	1	0.0044
142	1	0.00225
159	1	0.00336
168	1	0.00476
218	1	0.00725
35300	1	0.0132

CL144 ----> CL161

No. of shared pairs: :12

CL144 ----> CL257

No. of shared pairs: :10