Cluster no. 143

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Cluster is part of supercluster: 55

Cluster characteristics:

size 1292
size_real 1292
ecount 8697
supercluster 55
annotations_summary 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness 0.54916067146283
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000773993808049536
satellite_probability 1.46614129999921e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 422
S4 469
S6 401
comparative analysis - number of edges between species:
S5 S4 S6
S5 932 989 880
S4 989 1180 994
S6 880 994 859
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.030 0.971 1.000
S4 0.971 1.030 0.999
S6 1.000 0.999 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-PROT Ale Ty1-PROT 1 0.00077
Reina Ty3-INT Reina Ty3-INT 1 0.00077
TatV Ty3-RH TatV Ty3-RH 1 0.00077

clusters connected through mates:

Cluster Number of shared
read pairs		 k
582 7 0.0356
6330 4 0.0211
3150 3 0.0157
3910 3 0.0157
6040 3 0.0158
12 2 0.000682
16 2 0.0016
49 2 0.00152
54 2 0.00168
59 2 0.00181
168 2 0.00618
1870 2 0.0104
1990 2 0.0105
3280 2 0.0106
6220 2 0.0105
6490 2 0.0106
7600 2 0.0106
12100 2 0.0106
12300 2 0.0106
13700 2 0.0106
20200 2 0.0106
43800 2 0.0106
44900 2 0.0106
6 1 0.000268
7 1 0.000428
9 1 0.000757
10 1 0.000414
19 1 0.000589
34 1 0.00157
36 1 0.000803
38 1 0.00141
50 1 0.000928
58 1 0.000726
63 1 0.000753
66 1 0.00128
77 1 0.00101
85 1 0.00214
98 1 0.00106
102 1 0.00136
107 1 0.00255
110 1 0.00114
123 1 0.00319
132 1 0.00293
155 1 0.00435
210 1 0.00439
237 1 0.00488
244 1 0.00463
275 1 0.00473
543 1 0.00509
584 1 0.00499
912 1 0.00518
1450 1 0.00522
1890 1 0.00525
2530 1 0.00522
2890 1 0.00524
4650 1 0.00528
5680 1 0.00526
5750 1 0.00526
7070 1 0.00529
7190 1 0.00526
9510 1 0.00528
11400 1 0.00528
13500 1 0.00531
13600 1 0.00528
14100 1 0.00529
14300 1 0.00529
14600 1 0.00529
14700 1 0.00529
15100 1 0.00529
15500 1 0.00529
16700 1 0.00529
19400 1 0.00529
23400 1 0.00529
24300 1 0.00529
26600 1 0.00529
26700 1 0.00529
29400 1 0.00529
30100 1 0.00529
30400 1 0.00529
39700 1 0.00529
40100 1 0.00529
41500 1 0.00529
44000 1 0.00529
44500 1 0.00529
45100 1 0.00529
47200 1 0.00529