Cluster no. 142

Cluster no. 142

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Cluster is part of supercluster: 1

Cluster characteristics:

size	1330
size_real	1330
ecount	35374
supercluster	1
annotations_summary	0.45% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.285024154589372
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00225563909774436
satellite_probability	1.24960682050603e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	407
S4	463
S6	460

comparative analysis - number of edges between species:

	S5	S4	S6
S5	3550	4000	3730
S4	4000	4300	4090
S6	3730	4090	3870

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.987	1.010	1.000
S4	1.010	0.991	0.999
S6	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 1 0.00075

Tekay Ty3-GAG Tekay Ty3-GAG 6 0.00451

Athila Ty3-INT Athila Ty3-INT 1 0.00075

Tekay Ty3-RH Tekay Ty3-RH 1 0.00075

clusters with similarity:

Cluster	Number of similarity hits

1	1380
61	1200
2	694
7	422
19	143
27	4
3	1
48	1
62	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

61	209	0.134
1	92	0.0249
2	78	0.0225
6	27	0.0069
27	24	0.0189
19	13	0.00692
29	8	0.00311
62	8	0.00918
1920	7	0.0187
5	6	0.00232
11	4	0.0016
12	4	0.00128
22	4	0.0034
57	4	0.00269
7	3	0.00119
9	3	0.002
86	3	0.00308
1740	3	0.00803
2730	3	0.00803
10400	3	0.00808
4	2	0.000567
10	2	0.00077
14	2	0.00131
15	2	0.00149
16	2	0.0014
39	2	0.0018
50	2	0.00159
54	2	0.00145
58	2	0.00128
65	2	0.00207
66	2	0.00207
67	2	0.00254
74	2	0.00307
95	2	0.00362
113	2	0.00248
3000	2	0.00536
37100	2	0.00539
3	1	0.00039
8	1	0.000418
13	1	0.000552
17	1	0.000538
20	1	0.000497
23	1	0.000369
24	1	0.000673
26	1	0.000415
31	1	0.000656
33	1	0.000838
36	1	7e-04
37	1	0.000746
38	1	0.00112
40	1	0.000818
42	1	0.000778
45	1	0.000725
46	1	0.00063
48	1	0.000883
56	1	0.00066
59	1	0.000777
69	1	0.000966
75	1	0.00114
77	1	0.000851
83	1	0.000684
85	1	0.00154
87	1	0.00104
89	1	0.0015
90	1	0.00117
94	1	0.00085
99	1	0.000966
100	1	0.00153
103	1	0.000913
104	1	0.00097
110	1	0.000942
134	1	0.00158
136	1	0.00195
144	1	0.00225
147	1	0.00161
150	1	0.00159
214	1	0.00225
593	1	0.00268
661	1	0.00266
672	1	0.00264
1310	1	0.00267
2170	1	0.00267
2470	1	0.00268
2880	1	0.00268
3510	1	0.00268
3830	1	0.0027
4450	1	0.00269
5010	1	0.00269
6570	1	0.00269
13100	1	0.00269
13400	1	0.00269
27700	1	0.0027
33300	1	0.0027
35300	1	0.0027
38400	1	0.0027
42300	1	0.0027
47000	1	0.0027

CL142 ----> CL61

No. of shared pairs: :209

CL142 ----> CL1

No. of shared pairs: :92

CL142 ----> CL2

No. of shared pairs: :78

CL142 ----> CL6

No. of shared pairs: :27

CL142 ----> CL27

No. of shared pairs: :24

CL142 ----> CL19

No. of shared pairs: :13