Cluster no. 141

Cluster no. 141

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Cluster is part of supercluster: 54

Cluster characteristics:

size	1390
size_real	1390
ecount	17374
supercluster	54
annotations_summary	29.50% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.43% Class_I/LTR/Ty1_copia/TAR:Ty1-RT 0.14% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH 0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-RH 0.07% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
pair_completeness	0.795865633074935
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000719424460431655
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	457
S4	482
S6	451

comparative analysis - number of edges between species:

	S5	S4	S6
S5	1750	1920	1830
S4	1920	2090	2050
S6	1830	2050	1940

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.995
S4	1.000	0.989	1.010
S6	0.995	1.010	0.995

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 410 0.29496

Ale Ty1-RH Ale Ty1-RH 1 0.00072

Gymco-II Ty1-RH Gymco-II Ty1-RH 1 0.00072

Ivana Ty1-RH Ivana Ty1-RH 2 0.00144

TAR Ty1-RT TAR Ty1-RT 6 0.00432

clusters connected through mates:

Cluster	Number of shared read pairs	k

90	18	0.0318
964	5	0.0581
2020	4	0.0488
4850	4	0.0494
297	3	0.0335
2350	3	0.0368
3300	3	0.0366
4560	3	0.0368
13300	3	0.0373
1	2	0.000588
56	2	0.00163
59	2	0.00201
5780	2	0.0247
15600	2	0.025
29300	2	0.025
47800	2	0.025
10	1	0.000433
15	1	0.000955
16	1	0.000875
19	1	0.00063
49	1	0.000826
58	1	0.000788
64	1	0.000883
81	1	0.000974
83	1	0.000854
87	1	0.00149
126	1	0.00446
172	1	0.00707
247	1	0.00985
513	1	0.011
1320	1	0.0123
1940	1	0.0123
1960	1	0.012
3590	1	0.0126
6340	1	0.0123
7440	1	0.0124
8790	1	0.0124
9980	1	0.0124
11500	1	0.0124
12300	1	0.0124
13000	1	0.0126
16200	1	0.0125
19500	1	0.0125
22700	1	0.0125
26000	1	0.0125
27300	1	0.0125
28400	1	0.0125
29300	1	0.0125
34500	1	0.0125
39000	1	0.0125
39900	1	0.0125
45400	1	0.0125
46400	1	0.0125

CL141 ----> CL90

No. of shared pairs: :18