Cluster no. 140

Cluster no. 140

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Cluster is part of supercluster: 53

Cluster characteristics:

size	1424
size_real	1424
ecount	44222
supercluster	53
annotations_summary	0.56% organelle/mitochondria 0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness	0.554585152838428
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.452247191011236
satellite_probability	6.07723527051355e-06
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	497
S4	437
S6	490

comparative analysis - number of edges between species:

	S5	S4	S6
S5	5350	4940	5120
S4	4940	4500	4690
S6	5120	4690	4870

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.996	1.000	1.000
S4	1.000	0.997	0.999
S6	1.000	0.999	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 8 0.0056

Ale Ty1-INT Ale Ty1-INT 1 0.0007

clusters with similarity:

Cluster	Number of similarity hits

29	535
23	457
5	91
64	24

clusters connected through mates:

Cluster	Number of shared read pairs	k

29	186	0.0773
5	39	0.0161
23	10	0.00393
64	9	0.00715
21	6	0.00245
32	3	0.00197
71	3	0.00322
1	2	0.000567
13	2	0.00121
85	2	0.00414
34500	2	0.00976
10	1	0.000411
15	1	0.000853
19	1	0.000584
27	1	0.000907
31	1	0.000736
49	1	0.000749
62	1	0.00142
103	1	0.00108
111	1	0.00217
180	1	0.00312
441	1	0.0046
10300	1	0.00487
10800	1	0.00487
18900	1	0.00488
26100	1	0.00488
26400	1	0.00488
38700	1	0.00488
40900	1	0.00488
40900	1	0.00488
47900	1	0.00488

CL140 ----> CL29

No. of shared pairs: :186

CL140 ----> CL5

No. of shared pairs: :39

CL140 ----> CL23

No. of shared pairs: :10