Cluster no. 139

Cluster no. 139

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Cluster is part of supercluster: 5

Cluster characteristics:

size	1432
size_real	1432
ecount	12579
supercluster	5
annotations_summary	0.07% Class_I/Penelope:Penelope-RT
pair_completeness	0.45676500508647
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000698324022346369
satellite_probability	3.90603663686178e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	454
S4	484
S6	494

comparative analysis - number of edges between species:

	S5	S4	S6
S5	1440	1380	1410
S4	1380	1380	1400
S6	1410	1400	1380

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.010	0.987	0.999
S4	0.987	1.000	1.010
S6	0.999	1.010	0.989

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Penelope Penelope-RT Penelope Penelope-RT 1 7e-04

clusters with similarity:

Cluster	Number of similarity hits

47	218
93	75
16	13

clusters connected through mates:

Cluster	Number of shared read pairs	k

47	171	0.162
16	70	0.0526
93	44	0.0561
4130	4	0.0148
54	3	0.00236
550	3	0.0109
3920	3	0.0111
4550	3	0.0111
1580	2	0.00741
2310	2	0.00742
3260	2	0.00741
4950	2	0.00746
5720	2	0.00743
6990	2	0.00743
10000	2	0.00745
12100	2	0.00745
17300	2	0.00746
30500	2	0.00746
32200	2	0.00746
46500	2	0.00746
47100	2	0.00746
5	1	0.000403
7	1	0.000414
10	1	0.000401
24	1	0.000724
32	1	0.000631
41	1	0.000738
46	1	0.000673
94	1	0.000931
3010	1	0.00372
3710	1	0.00371
4090	1	0.00371
4930	1	0.00372
5560	1	0.00372
7240	1	0.00373
7850	1	0.00372
8240	1	0.00372
8570	1	0.00372
9700	1	0.00372
10400	1	0.00372
12200	1	0.00372
12300	1	0.00372
13500	1	0.00372
14600	1	0.00373
15600	1	0.00373
15600	1	0.00373
17400	1	0.00373
19700	1	0.00373
21700	1	0.00373
23700	1	0.00373
25100	1	0.00373
25700	1	0.00373
27600	1	0.00373
28200	1	0.00373
28400	1	0.00373
29000	1	0.00373
29400	1	0.00373
30200	1	0.00373
30300	1	0.00373
31500	1	0.00373
33100	1	0.00373
33600	1	0.00373
34100	1	0.00373
34100	1	0.00373
39100	1	0.00373
40000	1	0.00373
41400	1	0.00373
44700	1	0.00373
45000	1	0.00373
46300	1	0.00373
48000	1	0.00373

CL139 ----> CL47

No. of shared pairs: :171

CL139 ----> CL16

No. of shared pairs: :70

CL139 ----> CL93

No. of shared pairs: :44