Cluster no. 138

Cluster no. 138

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Cluster is part of supercluster: 52

Cluster characteristics:

size	1434
size_real	1434
ecount	4420
supercluster	52
annotations_summary	0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness	0.473792394655704
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000697350069735007
satellite_probability	3.54668226065428e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	470
S4	452
S6	512

comparative analysis - number of edges between species:

	S5	S4	S6
S5	494	490	502
S4	490	473	450
S6	502	450	570

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.989	1.030	0.982
S4	1.030	1.050	0.924
S6	0.982	0.924	1.090

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-PROT Ale Ty1-PROT 1 7e-04

Athila Ty3-RT Athila Ty3-RT 1 7e-04

clusters connected through mates:

Cluster	Number of shared read pairs	k

57	34	0.0247
187	15	0.0472
344	14	0.0507
1470	10	0.0382
1350	7	0.0267
514	6	0.0225
2070	5	0.0192
265	4	0.014
371	4	0.0145
2640	4	0.0154
3180	4	0.0154
35	3	0.00232
672	3	0.0113
1530	3	0.0116
5580	3	0.0116
6140	3	0.0116
59	2	0.00171
599	2	0.00749
1240	2	0.00772
3910	2	0.00777
5430	2	0.00775
6050	2	0.00775
6510	2	0.00775
8130	2	0.00777
8230	2	0.00777
9800	2	0.00777
10300	2	0.00777
11200	2	0.00777
11400	2	0.00777
12500	2	0.00777
15800	2	0.00778
25700	2	0.00778
26000	2	0.00778
29700	2	0.00778
32200	2	0.00778
40700	2	0.00778
44100	2	0.00778
45200	2	0.00778
47000	2	0.00778
47100	2	0.00778
47900	2	0.00778
4	1	0.000293
10	1	0.000402
15	1	0.000817
19	1	0.000567
25	1	0.00115
30	1	0.000534
61	1	0.000692
75	1	0.0013
80	1	0.00227
94	1	0.000941
110	1	0.00106
645	1	0.00385
939	1	0.00383
1050	1	0.0038
1670	1	0.00385
1680	1	0.00383
2420	1	0.00387
2800	1	0.00388
2960	1	0.00388
3420	1	0.00388
3560	1	0.00387
3690	1	0.00387
4040	1	0.00388
4180	1	0.00387
4320	1	0.00388
5350	1	0.00389
5510	1	0.00388
5720	1	0.00388
6070	1	0.00389
6310	1	0.00389
6900	1	0.00388
8330	1	0.0039
9040	1	0.00388
9480	1	0.00388
10600	1	0.00388
10800	1	0.0039
11100	1	0.00388
12200	1	0.00388
12400	1	0.00388
12800	1	0.00388
13900	1	0.00389
13900	1	0.00389
15800	1	0.00389
16700	1	0.00389
16700	1	0.00389
16800	1	0.00389
18300	1	0.00389
21300	1	0.00389
24000	1	0.00389
26400	1	0.00389
28900	1	0.00389
29600	1	0.00389
30100	1	0.00389
31400	1	0.00389
32300	1	0.00389
36800	1	0.00389
37900	1	0.00389
40400	1	0.00389
40900	1	0.00389
41000	1	0.00389
41800	1	0.00389
43900	1	0.00389

CL138 ----> CL57

No. of shared pairs: :34

CL138 ----> CL187

No. of shared pairs: :15

CL138 ----> CL344

No. of shared pairs: :14

CL138 ----> CL1471

No. of shared pairs: :10