Cluster no. 135

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Cluster is part of supercluster: 49

Cluster characteristics:

size 1510
size_real 1510
ecount 24094
supercluster 49
annotations_summary 0.07% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.646673936750273
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.656291390728477
satellite_probability 0.00579350875152524
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 507
S4 495
S6 508
comparative analysis - number of edges between species:
S5 S4 S6
S5 2690 2710 2640
S4 2710 2680 2680
S6 2640 2680 2660
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 1.010 0.992
S4 1.010 0.992 1.000
S6 0.992 1.000 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-RT SIRE Ty1-RT 1 0.00066

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 7 0.00201
45 4 0.00341
58 3 0.00222
7 2 0.000866
19 2 0.0012
56 2 0.00153
16000 2 0.0123
34900 2 0.0123
42600 2 0.0123
2 1 0.000307
9 1 0.000772
15 1 0.000885
18 1 0.000724
30 1 0.000563
40 1 0.000985
41 1 8e-04
42 1 0.000928
52 1 0.00102
59 1 0.000927
60 1 0.00233
62 1 0.00151
63 1 0.000768
84 1 0.00116
94 1 0.00103
99 1 0.00121
126 1 0.00326
132 1 0.00317
150 1 0.00237
519 1 0.00599