Cluster no. 134

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Cluster is part of supercluster: 48

Cluster characteristics:

size 1514
size_real 1514
ecount 9667
supercluster 48
annotations_summary
pair_completeness 0.484313725490196
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0270805812417437
satellite_probability 2.83942945932414e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 514
S4 473
S6 527
comparative analysis - number of edges between species:
S5 S4 S6
S5 1400 1120 1140
S4 1120 929 940
S6 1140 940 959
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.99 0.991
S4 0.990 1.01 1.000
S6 0.991 1.00 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
37 62
46 5
150 2
1 1
64 1
71 1
98 1
121 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
37 54 0.0438
98 18 0.0177
117 17 0.0225
150 14 0.0268
288 13 0.0471
46 10 0.00675
193 8 0.0255
937 5 0.0187
1570 5 0.0187
743 4 0.0149
2470 4 0.015
121 3 0.00459
660 3 0.0109
2890 3 0.0113
4300 3 0.0113
54 2 0.00158
64 2 0.00152
84 2 0.00207
168 2 0.00502
374 2 0.00722
1170 2 0.00745
2790 2 0.00755
3490 2 0.00755
4380 2 0.00753
7900 2 0.00756
8830 2 0.00756
32000 2 0.00758
33000 2 0.00758
35100 2 0.00758
45800 2 0.00758
46000 2 0.00758
47700 2 0.00758
3 1 0.000407
5 1 0.000404
7 1 0.000415
8 1 0.000438
13 1 0.000586
15 1 0.000812
30 1 0.000532
32 1 0.000632
35 1 0.00077
38 1 0.00127
57 1 0.000724
63 1 0.000713
67 1 0.00147
71 1 0.00101
72 1 0.000797
80 1 0.00224
104 1 0.00108
119 1 0.0014
127 1 0.00232
136 1 0.00247
142 1 0.00158
156 1 0.00214
170 1 0.00284
260 1 0.0034
439 1 0.0036
1030 1 0.00372
1330 1 0.00373
2250 1 0.00376
3080 1 0.00376
3530 1 0.00376
3810 1 0.00377
5530 1 0.00379
7590 1 0.0038
8420 1 0.00378
8510 1 0.0038
8810 1 0.00378
9320 1 0.00378
9800 1 0.00378
10000 1 0.00378
10300 1 0.00378
11300 1 0.00378
11800 1 0.00378
12000 1 0.0038
16700 1 0.00379
18300 1 0.00379
18300 1 0.00379
20600 1 0.00379
21800 1 0.00379
22800 1 0.00379
26200 1 0.00379
27600 1 0.00379
28500 1 0.00379
30200 1 0.00379
31300 1 0.00379
33200 1 0.00379
33900 1 0.00379
34100 1 0.00379
39100 1 0.00379
42300 1 0.00379
43200 1 0.00379
43600 1 0.00379
46300 1 0.00379

CL134 ----> CL37

image

No. of shared pairs: :54

CL134 ----> CL98

image

No. of shared pairs: :18

CL134 ----> CL117

image

No. of shared pairs: :17

CL134 ----> CL150

image

No. of shared pairs: :14

CL134 ----> CL288

image

No. of shared pairs: :13

CL134 ----> CL46

image

No. of shared pairs: :10