Cluster no. 133

Cluster no. 133

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Cluster is part of supercluster: 47

Cluster characteristics:

size	1563
size_real	1563
ecount	104701
supercluster	47
annotations_summary	0.06% organelle/plastid
pair_completeness	0.673447537473233
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.442738323736404
satellite_probability	1.79554657457467e-06
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	497
S4	512
S6	554

comparative analysis - number of edges between species:

	S5	S4	S6
S5	9990	11000	11300
S4	11000	12400	12500
S6	11300	12500	12500

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.999	0.994	1.01
S4	0.994	1.000	1.00
S6	1.010	1.000	0.99

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00064

clusters with similarity:

Cluster	Number of similarity hits

19	852
14	552
51	391
120	340
4	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	127	0.0971
19	103	0.062
51	37	0.0314
26	3	0.00137
1	1	0.000288
4	1	0.000302
5	1	0.000423
8	1	0.00046
13	1	0.000627
35	1	0.000841
41	1	0.000806
46	1	0.00073
48	1	0.00109
52	1	0.00103
84	1	0.00117
103	1	0.00114
120	1	0.00194
198	1	0.00541
257	1	0.00578

CL133 ----> CL14

No. of shared pairs: :127

CL133 ----> CL19

No. of shared pairs: :103

CL133 ----> CL51

No. of shared pairs: :37