Cluster no. 132

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Cluster is part of supercluster: 46

Cluster characteristics:

size 1586
size_real 1586
ecount 43235
supercluster 46
annotations_summary 0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.676532769556025
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00189155107187894
satellite_probability 2.29499556110385e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 524
S4 557
S6 505
comparative analysis - number of edges between species:
S5 S4 S6
S5 4700 5080 4550
S4 5080 5540 4780
S6 4550 4780 4180
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.990 0.995 1.020
S4 0.995 1.010 0.993
S6 1.020 0.993 0.991

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TAR Ty1-RH TAR Ty1-RH 1 0.00063
TatV Ty3-INT TatV Ty3-INT 1 0.00063
Tekay Ty3-INT Tekay Ty3-INT 1 0.00063

clusters with similarity:

Cluster Number of similarity hits
2 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
20 6 0.00334
5 5 0.00211
41 5 0.00403
508 5 0.0308
9 4 0.00311
22 4 0.00417
4680 4 0.0257
2 3 0.000925
3 3 0.00128
6 3 0.000812
19 3 0.00181
33 3 0.00307
35 3 0.00252
46 3 0.00219
106 3 0.00817
113 3 0.0051
1 2 0.000576
11 2 0.000876
34 2 0.00331
40 2 0.00199
42 2 0.00187
44 2 0.00295
51 2 0.0017
61 2 0.00149
62 2 0.00306
72 2 0.00175
101 2 0.00341
172 2 0.00928
4 1 0.000302
15 1 0.000892
16 1 0.000822
17 1 0.000609
24 1 0.000789
27 1 0.000951
28 1 0.000554
30 1 0.000566
37 1 0.00089
43 1 0.001
45 1 0.00086
48 1 0.00109
50 1 0.000959
59 1 0.000935
64 1 0.000829
68 1 0.000779
70 1 0.00158
71 1 0.00113
80 1 0.00297
86 1 0.00132
90 1 0.00156
96 1 0.00138
97 1 0.00166
108 1 0.00112
111 1 0.00244
115 1 0.00149
121 1 0.00184
123 1 0.00359
130 1 0.00212
135 1 0.00317
136 1 0.00338
143 1 0.00293
144 1 0.0044
150 1 0.00242
168 1 0.00347
178 1 0.00435
198 1 0.00539
207 1 0.00597
249 1 0.00587
281 1 0.00571
309 1 0.00573
610 1 0.00639
717 1 0.00629
896 1 0.00627
1420 1 0.00631
1430 1 0.00635
1540 1 0.00641
2980 1 0.00641
3800 1 0.00643
4090 1 0.00643
4740 1 0.00643
4890 1 0.00645
5410 1 0.00645
5870 1 0.00645
7770 1 0.00647
8720 1 0.00647
10500 1 0.00651
10900 1 0.00647
13700 1 0.00649
21600 1 0.00649
24000 1 0.00649
29700 1 0.00649
31500 1 0.00649
33900 1 0.00649
38600 1 0.00649
42000 1 0.00649
44400 1 0.00649
46900 1 0.00649