Cluster no. 131

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Cluster is part of supercluster: 45

Cluster characteristics:

size 1649
size_real 1649
ecount 13295
supercluster 45
annotations_summary 96.24% organelle/plastid
0.55% organelle/mitochondria
0.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness 0.960760998810939
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000606428138265616
satellite_probability 7.56182038373497e-25
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 547
S4 549
S6 553
comparative analysis - number of edges between species:
S5 S4 S6
S5 1470 1520 1500
S4 1520 1480 1430
S6 1500 1430 1460
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.973 1.020 1.010
S4 1.020 1.010 0.978
S6 1.010 0.978 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 9 0.0055
plastid plastid 1587 0.9624
TatV Ty3-RH TatV Ty3-RH 8 0.0049

clusters with similarity:

Cluster Number of similarity hits
160 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
160 11 0.338
152 7 0.206
38 1 0.00186
8730 1 0.0556
11400 1 0.0556

CL131 ----> CL160

image

No. of shared pairs: :11