Cluster no. 130

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Cluster is part of supercluster: 44

Cluster characteristics:

size 1655
size_real 1655
ecount 8737
supercluster 44
annotations_summary 0.06% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.06% Class_I/LINE:LINE-RT
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness 0.444153577661431
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0326283987915408
satellite_probability 3.59980056797293e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 577
S4 559
S6 519
comparative analysis - number of edges between species:
S5 S4 S6
S5 1050 972 984
S4 972 1010 931
S6 984 931 909
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.972 1.010
S4 0.972 1.040 0.989
S6 1.010 0.989 0.996

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 6e-04
LINE LINE-RT LINE LINE-RT 1 6e-04
Ale Ty1-RH Ale Ty1-RH 1 6e-04

clusters connected through mates:

Cluster Number of shared
read pairs		 k
286 23 0.066
59 4 0.00324
83 4 0.00283
147 4 0.00704
1 3 0.000824
45 3 0.00226
10 2 0.000785
40 2 0.00171
49 2 0.00138
56 2 0.00137
62 2 0.00244
84 2 0.00196
1470 2 0.00617
1480 2 0.00621
4510 2 0.00625
11400 2 0.00625
15500 2 0.00626
19100 2 0.00626
33100 2 0.00626
34400 2 0.00626
35300 2 0.00626
7 1 0.000406
11 1 0.000409
15 1 0.000777
17 1 0.000553
18 1 0.00065
19 1 0.000547
32 1 0.000611
33 1 0.000876
35 1 0.000738
36 1 0.000726
57 1 0.000696
58 1 0.000663
67 1 0.00136
72 1 0.000764
73 1 0.000832
85 1 0.00167
94 1 0.000888
118 1 0.00285
132 1 0.00212
168 1 0.0022
185 1 0.00262
189 1 0.00253
214 1 0.00255
1020 1 0.00309
2160 1 0.0031
2440 1 0.00311
2500 1 0.00311
4070 1 0.00312
6810 1 0.00313
8880 1 0.00312
10000 1 0.00312
11600 1 0.00312
12200 1 0.00312
13300 1 0.00312
14900 1 0.00313
15600 1 0.00313
15900 1 0.00313
16100 1 0.00313
16100 1 0.00313
16600 1 0.00313
18500 1 0.00313
20500 1 0.00313
21500 1 0.00313
25300 1 0.00313
29100 1 0.00313
31100 1 0.00313
31700 1 0.00313
31700 1 0.00313
39300 1 0.00313
42000 1 0.00313
44700 1 0.00313
46900 1 0.00313
47300 1 0.00313

CL130 ----> CL286

image

No. of shared pairs: :23