Cluster no. 129

Cluster no. 129

Go back to cluster table

Cluster is part of supercluster: 43

Cluster characteristics:

size	1677
size_real	1677
ecount	76792
supercluster	43
annotations_summary	0.18% organelle/mitochondria 0.06% organelle/plastid
pair_completeness	0.5
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.013118664281455
satellite_probability	7.48572094908218e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	546
S4	530
S6	601

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8160	8190	8670
S4	8190	8160	8750
S6	8670	8750	9250

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.998
S4	1.000	0.995	1.000
S6	0.998	1.000	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 3 0.0018

plastid plastid 1 0.0006

clusters with similarity:

Cluster	Number of similarity hits

29	2620
23	548
109	405
55	10
71	9
173	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

29	214	0.0863
109	39	0.0441
21	24	0.00951
23	10	0.00382
577	7	0.0244
55	5	0.00385
3010	5	0.0177
64	3	0.00225
2330	3	0.0106
2840	3	0.0106
7410	3	0.0107
8550	3	0.0107
4	2	0.000582
8160	2	0.00712
8600	2	0.00712
10600	2	0.00712
10600	2	0.00712
12400	2	0.00712
17500	2	0.00713
22800	2	0.00713
23200	2	0.00713
25200	2	0.00713
25500	2	0.00713
28000	2	0.00713
35300	2	0.00713
40000	2	0.00713
1	1	0.000278
6	1	0.000262
9	1	0.000708
14	1	0.000697
52	1	0.000908
61	1	0.000681
68	1	0.000709
71	1	0.000992
80	1	0.00216
173	1	0.00237
236	1	0.00319
4040	1	0.00356
4060	1	0.00356
4670	1	0.00355
5060	1	0.00355
7620	1	0.00357
8440	1	0.00356
10900	1	0.00356
11700	1	0.00356
12700	1	0.00356
12700	1	0.00357
15600	1	0.00357
16300	1	0.00357
17200	1	0.00357
17600	1	0.00357
19600	1	0.00357
22900	1	0.00357
23500	1	0.00357
24000	1	0.00357
25000	1	0.00357
26700	1	0.00357
27100	1	0.00357
35500	1	0.00357
35800	1	0.00357
40100	1	0.00357
40300	1	0.00357
41700	1	0.00357
44400	1	0.00357
44600	1	0.00357
46100	1	0.00357
47500	1	0.00357

CL129 ----> CL29

No. of shared pairs: :214

CL129 ----> CL109

No. of shared pairs: :39

CL129 ----> CL21

No. of shared pairs: :24

CL129 ----> CL23

No. of shared pairs: :10