Cluster no. 127

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Cluster is part of supercluster: 36

Cluster characteristics:

size 1708
size_real 1708
ecount 29046
supercluster 36
annotations_summary 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness 0.671232876712329
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000585480093676815
satellite_probability 2.69560262167269e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 579
S4 571
S6 558
comparative analysis - number of edges between species:
S5 S4 S6
S5 3470 3240 3280
S4 3240 3040 3170
S6 3280 3170 3170
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.997 0.993
S4 0.997 0.990 1.010
S6 0.993 1.010 0.995

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.00059
Tekay Ty3-INT Tekay Ty3-INT 1 0.00059
TatV Ty3-RH TatV Ty3-RH 1 0.00059

clusters with similarity:

Cluster Number of similarity hits
20 3
4 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
161 33 0.142
87 4 0.00527
1400 4 0.0233
1 3 0.00086
7 3 0.0013
19 3 0.00179
20 3 0.00166
45 3 0.00255
13 2 0.00124
21 2 0.000829
32 2 0.00134
33 2 0.00202
57 2 0.00156
86 2 0.0026
98 2 0.00217
174 2 0.00907
2100 2 0.0117
14200 2 0.0118
31900 2 0.0118
32100 2 0.0118
46500 2 0.0118
4 1 0.000301
5 1 0.00042
6 1 0.00027
9 1 0.000768
11 1 0.000435
15 1 0.00088
24 1 0.000779
27 1 0.000938
28 1 0.00055
29 1 0.000422
30 1 0.000561
34 1 0.00162
35 1 0.00083
36 1 0.000816
37 1 0.000878
40 1 0.000979
42 1 0.000923
52 1 0.00101
54 1 0.000852
61 1 0.000736
63 1 0.000765
64 1 0.000818
69 1 0.0012
71 1 0.00112
76 1 0.00152
83 1 0.000793
84 1 0.00115
88 1 0.00216
95 1 0.00285
105 1 0.00165
111 1 0.00236
115 1 0.00145
119 1 0.00162
121 1 0.00179
134 1 0.00232
144 1 0.00412
241 1 0.0056
391 1 0.00538
1430 1 0.0058
1670 1 0.00578
3140 1 0.00585
4940 1 0.00588
7280 1 0.00592
9470 1 0.00593
9730 1 0.00593
11700 1 0.0059
21500 1 0.00592
24900 1 0.00592
30700 1 0.00592
33000 1 0.00592
33400 1 0.00592
35000 1 0.00592
45000 1 0.00592

CL127 ----> CL161

image

No. of shared pairs: :33