Cluster no. 125

Cluster no. 125

Go back to cluster table

Cluster is part of supercluster: 6

Cluster characteristics:

size	1793
size_real	1793
ecount	63052
supercluster	6
annotations_summary	0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness	0.490440565253533
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00223089793641941
satellite_probability	2.89707838193454e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	562
S4	619
S6	612

comparative analysis - number of edges between species:

	S5	S4	S6
S5	6350	6870	6840
S4	6870	7290	7380
S6	6840	7380	7240

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.995	1.000	1.000
S4	1.000	0.991	1.010
S6	1.000	1.010	0.992

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 1 0.00056

clusters with similarity:

Cluster	Number of similarity hits

78	1760
52	1230
59	1160

clusters connected through mates:

Cluster	Number of shared read pairs	k

52	188	0.167
59	159	0.13
78	115	0.133
219	5	0.0137
1	2	0.000551
62	2	0.00248
83	2	0.00143
3440	2	0.00646
7140	2	0.00648
2	1	0.000294
6	1	0.00026
10	1	0.000394
14	1	0.000684
16	1	0.00073
27	1	0.00083
32	1	0.000615
49	1	0.000695
54	1	0.000762
85	1	0.00171
90	1	0.00126
103	1	0.000969
191	1	0.00274
323	1	0.00312
2620	1	0.00323
4680	1	0.00324
43800	1	0.00325

CL125 ----> CL52

No. of shared pairs: :188

CL125 ----> CL59

No. of shared pairs: :159

CL125 ----> CL78

No. of shared pairs: :115