Cluster no. 124

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Cluster is part of supercluster: 40

Cluster characteristics:

size 1819
size_real 1819
ecount 20203
supercluster 40
annotations_summary 99.73% organelle/plastid
0.11% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.939232409381663
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000549752611324904
satellite_probability 1.22924222468107e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 630
S4 565
S6 624
comparative analysis - number of edges between species:
S5 S4 S6
S5 2420 2150 2380
S4 2150 1990 2160
S6 2380 2160 2420
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.993 0.995
S4 0.993 1.010 0.995
S6 0.995 0.995 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1814 0.9973
Ale Ty1-RT Ale Ty1-RT 2 0.0011

clusters with similarity:

Cluster Number of similarity hits
118 10
162 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
304 11 0.272
118 9 0.149
162 7 0.171
3 1 0.000451
10 1 0.000443
21 1 0.00044
23 1 0.000422
28 1 0.000595
50 1 0.00109
57 1 0.000872
87 1 0.00162
96 1 0.00166
2280 1 0.0317
2770 1 0.0323
19300 1 0.0339

CL124 ----> CL304

image

No. of shared pairs: :11