Cluster no. 122

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Cluster is part of supercluster: 4

Cluster characteristics:

size	1955
size_real	1955
ecount	80425
supercluster	4
annotations_summary	0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 0.10% Class_I/LINE:LINE-ENDO 0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG 0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
pair_completeness	0.428049671292914
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00460358056265985
satellite_probability	5.12148319141113e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	686
S4	595
S6	674

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8660	8000	9760
S4	8000	7430	8980
S6	9760	8980	10800

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.997	0.998	1.000
S4	0.998	1.000	1.000
S6	1.000	1.000	0.997

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 2 0.00102

Ale Ty1-PROT Ale Ty1-PROT 2 0.00102

Tork Ty1-PROT Tork Ty1-PROT 1 0.00051

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 2 0.00102

TatV Ty3-RH TatV Ty3-RH 3 0.00153

clusters with similarity:

Cluster	Number of similarity hits

58	478
38	175
110	26

clusters connected through mates:

Cluster	Number of shared read pairs	k

58	316	0.2
38	295	0.323
2160	4	0.0101
10	3	0.00115
1290	2	0.00508
2540	2	0.00506
7650	2	0.00509
1	1	0.000269
8	1	0.000414
19	1	0.000526
30	1	0.000498
36	1	0.00069
52	1	0.000824
53	1	0.00106
60	1	0.00152
61	1	0.000632
94	1	0.000834
100	1	0.00148
103	1	0.000896
164	1	0.00184
237	1	0.00245
273	1	0.00244
12400	1	0.00254
13500	1	0.00254
13600	1	0.00254
16300	1	0.00255
18800	1	0.00255
19600	1	0.00255
20400	1	0.00255
21500	1	0.00255
22600	1	0.00255
22900	1	0.00255
25200	1	0.00255
29800	1	0.00255
33000	1	0.00255
35500	1	0.00255
37700	1	0.00255

CL122 ----> CL58

No. of shared pairs: :316

CL122 ----> CL38

No. of shared pairs: :295