Cluster no. 121

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Cluster is part of supercluster: 38

Cluster characteristics:

size 2009
size_real 2009
ecount 5119
supercluster 38
annotations_summary
pair_completeness 0.440143369175627
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.106520657043305
satellite_probability 5.0958988550974e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 690
S4 698
S6 621
comparative analysis - number of edges between species:
S5 S4 S6
S5 597 558 554
S4 558 610 576
S6 554 576 536
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.050 0.959 0.995
S4 0.959 1.030 1.010
S6 0.995 1.010 0.989

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
64 5
117 4
37 3
19 1
47 1
134 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
37 10 0.00734
905 9 0.0226
98 6 0.00525
15 4 0.00294
19 4 0.00211
117 4 0.00453
10 3 0.00115
134 3 0.00459
5220 3 0.00764
7960 3 0.00765
13300 3 0.00765
2 2 0.000574
5 2 0.000768
7 2 0.000788
13 2 0.00109
16 2 0.00138
41 2 0.00135
45 2 0.00143
56 2 0.0013
72 2 0.00145
94 2 0.00167
137 2 0.00264
440 2 0.005
621 2 0.00503
1480 2 0.00506
2670 2 0.00508
4120 2 0.0051
5230 2 0.0051
8800 2 0.0051
13700 2 0.00511
22300 2 0.00511
28600 2 0.00511
29300 2 0.00511
31900 2 0.00511
33300 2 0.00511
43000 2 0.00511
48000 2 0.00511
1 1 0.000269
3 1 0.000387
8 1 0.000415
9 1 0.000656
24 1 0.000664
26 1 0.000412
30 1 0.000499
32 1 0.000585
47 1 0.000846
49 1 0.000657
54 1 0.000716
58 1 0.000633
59 1 0.000765
64 1 0.000692
75 1 0.00111
78 1 0.00105
83 1 0.000674
84 1 0.000915
85 1 0.00149
110 1 0.000924
113 1 0.00121
115 1 0.0011
127 1 0.00179
132 1 0.00184
150 1 0.00154
168 1 0.0019
178 1 0.00214
189 1 0.00214
214 1 0.00216
234 1 0.00234
435 1 0.00249
439 1 0.00247
559 1 0.00251
1120 1 0.00253
1200 1 0.00254
1240 1 0.00253
1430 1 0.00253
1920 1 0.00254
1950 1 0.00254
2240 1 0.00254
3020 1 0.00254
3370 1 0.00255
3490 1 0.00255
4630 1 0.00254
5250 1 0.00255
5340 1 0.00255
5920 1 0.00255
6930 1 0.00255
8770 1 0.00255
9350 1 0.00255
11000 1 0.00255
12200 1 0.00255
12600 1 0.00255
13400 1 0.00255
15800 1 0.00255
16400 1 0.00255
19100 1 0.00255
20400 1 0.00255
20900 1 0.00255
24500 1 0.00255
25500 1 0.00255
26700 1 0.00255
34900 1 0.00255
43200 1 0.00255
44500 1 0.00255
46200 1 0.00255
47400 1 0.00255
47600 1 0.00255

CL121 ----> CL37

image

No. of shared pairs: :10