Cluster no. 120

Cluster no. 120

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Cluster is part of supercluster: 8

Cluster characteristics:

size	2037
size_real	2037
ecount	200896
supercluster	8
annotations_summary	0.25% organelle/plastid
pair_completeness	0.473950795947902
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.641138929798724
satellite_probability	0.00339495767599577
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	676
S4	647
S6	714

comparative analysis - number of edges between species:

	S5	S4	S6
S5	22100	21100	23300
S4	21100	20200	22500
S6	23300	22500	24900

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.995
S4	1.000	0.996	1.000
S6	0.995	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 5 0.0025

clusters with similarity:

Cluster	Number of similarity hits

14	4880
51	910
133	340
119	84
5	20
84	4
2	1
6	1
19	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	313	0.206
51	235	0.169
119	78	0.0959
84	17	0.0159
2	5	0.00145
5	5	0.00194
1	3	0.000814
4	2	0.000568
19	2	0.00107
3	1	0.000391
7	1	0.000398
12	1	0.000322
16	1	0.000701
30	1	0.000505
38	1	0.00113
39	1	0.000903
47	1	0.000866
55	1	0.000723
67	1	0.00128
74	1	0.00155
80	1	0.00183
85	1	0.00156
87	1	0.00105
94	1	0.000854
133	1	0.00194
137	1	0.00137
316	1	0.0026
1780	1	0.00272
2690	1	0.00274
28700	1	0.00274
46400	1	0.00274

CL120 ----> CL14

No. of shared pairs: :313

CL120 ----> CL51

No. of shared pairs: :235

CL120 ----> CL119

No. of shared pairs: :78

CL120 ----> CL84

No. of shared pairs: :17