Cluster no. 119

Cluster no. 119

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Cluster is part of supercluster: 37

Cluster characteristics:

size	2063
size_real	2063
ecount	8344
supercluster	37
annotations_summary	0.05% organelle/mitochondria 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.05% organelle/plastid
pair_completeness	0.392977717758271
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0877363063499758
satellite_probability	6.90958642510552e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	639
S4	702
S6	722

comparative analysis - number of edges between species:

	S5	S4	S6
S5	815	846	907
S4	846	962	984
S6	907	984	1100

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.030	0.985	0.987
S4	0.985	1.030	0.985
S6	0.987	0.985	1.030

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00048

plastid plastid 1 0.00048

Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00048

clusters with similarity:

Cluster	Number of similarity hits

120	84
5	77
14	21
84	19
2	17
104	10
64	6
50	2
98	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	179	0.0672
120	78	0.0959
14	72	0.0449
84	44	0.0382
2	36	0.0102
50	29	0.0216
64	20	0.0133
51	9	0.0061
104	7	0.00631
4	5	0.00139
31	5	0.00312
19	4	0.00204
10	3	0.00112
30	3	0.00145
6	2	0.000501
85	2	0.00275
218	2	0.0039
220	2	0.00397
6840	2	0.00444
7360	2	0.00443
9150	2	0.00443
10000	2	0.00443
20000	2	0.00444
23200	2	0.00444
29800	2	0.00444
31200	2	0.00444
36500	2	0.00444
39200	2	0.00444
40100	2	0.00444
1	1	0.000265
7	1	0.000385
12	1	0.000313
13	1	0.000529
25	1	0.00094
28	1	0.000476
35	1	0.000673
36	1	0.000663
42	1	0.000733
49	1	0.000633
63	1	0.000629
71	1	0.000849
81	1	0.000716
90	1	0.00107
93	1	0.00103
98	1	0.000832
103	1	0.000851
127	1	0.00162
134	1	0.0014
366	1	0.00213
1010	1	0.0022
1360	1	0.0022
2240	1	0.00221
5060	1	0.00221
7370	1	0.00222
8190	1	0.00222
8530	1	0.00222
10600	1	0.00222
16500	1	0.00222
22300	1	0.00222
29300	1	0.00222
29900	1	0.00222
30900	1	0.00222
38700	1	0.00222
42600	1	0.00222
44400	1	0.00222
45900	1	0.00222
46000	1	0.00222

CL119 ----> CL5

No. of shared pairs: :179

CL119 ----> CL120

No. of shared pairs: :78

CL119 ----> CL14

No. of shared pairs: :72

CL119 ----> CL84

No. of shared pairs: :44

CL119 ----> CL2

No. of shared pairs: :36

CL119 ----> CL50

No. of shared pairs: :29

CL119 ----> CL64

No. of shared pairs: :20