Cluster no. 118

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Cluster is part of supercluster: 25

Cluster characteristics:

size 2254
size_real 2254
ecount 32411
supercluster 25
annotations_summary 99.65% organelle/plastid
0.35% organelle/mitochondria
pair_completeness 0.944779982743745
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000443655723158829
satellite_probability 1.22924222468107e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 757
S4 744
S6 753
comparative analysis - number of edges between species:
S5 S4 S6
S5 3660 3580 3630
S4 3580 3550 3600
S6 3630 3600 3580
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.995 1.000
S4 0.995 0.999 1.010
S6 1.000 1.010 0.993

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 8 0.0035
plastid plastid 2246 0.9965

clusters with similarity:

Cluster Number of similarity hits
116 22
124 10

clusters connected through mates:

Cluster Number of shared
read pairs		 k
116 23 0.324
124 9 0.149
30 2 0.00121
4 1 0.000313
13 1 0.000678
23 1 0.000421
43 1 0.00114
48 1 0.00126
54 1 0.000964
71 1 0.00131
81 1 0.00102
130 1 0.00285
146 1 0.0179
170 1 0.0083
1060 1 0.027
13100 1 0.0299
23400 1 0.0303
24900 1 0.0303

CL118 ----> CL116

image

No. of shared pairs: :23