Cluster no. 117

Cluster no. 117

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Cluster is part of supercluster: 5

Cluster characteristics:

size	2312
size_real	2312
ecount	55283
supercluster	5
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.04% organelle/plastid
pair_completeness	0.402061855670103
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0285467128027682
satellite_probability	4.36415030440743e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	791
S4	765
S6	756

comparative analysis - number of edges between species:

	S5	S4	S6
S5	6280	6280	6050
S4	6280	6250	6070
S6	6050	6070	5940

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.995
S4	1.000	0.998	0.999
S6	0.995	0.999	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00043

Ale Ty1-INT Ale Ty1-INT 1 0.00043

Reina Ty3-GAG Reina Ty3-GAG 1 0.00043

clusters with similarity:

Cluster	Number of similarity hits

3	345
37	336
50	149
24	141
47	97
121	4
158	3
18	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

37	199	0.136
50	128	0.0926
24	94	0.0585
47	88	0.0685
3	69	0.0257
158	49	0.0865
134	17	0.0225
5	16	0.00591
256	7	0.0137
7	6	0.00227
435	6	0.0119
1600	5	0.0101
121	4	0.00453
876	4	0.00801
1	3	0.000787
18	3	0.00175
32	3	0.00166
662	3	0.00596
1280	3	0.00602
3070	3	0.00605
4860	3	0.00606
6640	3	0.00606
10	2	0.000735
13	2	0.00103
30	2	0.000949
35	2	0.00131
54	2	0.00133
62	2	0.00201
93	2	0.00198
96	2	0.00188
1700	2	0.00402
2940	2	0.00404
3640	2	0.00404
20000	2	0.00405
23400	2	0.00405
28100	2	0.00405
29700	2	0.00405
32300	2	0.00405
44900	2	0.00405
47800	2	0.00405
15	1	0.000684
19	1	5e-04
26	1	0.000395
40	1	0.000743
41	1	0.000633
45	1	0.000665
49	1	0.000616
56	1	0.00061
58	1	0.000594
60	1	0.00132
61	1	0.000594
73	1	0.000726
81	1	0.000694
85	1	0.0013
105	1	0.00107
107	1	0.00143
168	1	0.00159
214	1	0.00177
482	1	0.002
2380	1	0.00201
3530	1	0.00202
4480	1	0.00202
7420	1	0.00203
7730	1	0.00202
8540	1	0.00202
8670	1	0.00202
9320	1	0.00202
10600	1	0.00202
10800	1	0.00202
11100	1	0.00202
12600	1	0.00202
18100	1	0.00202
28100	1	0.00202
28600	1	0.00202
29100	1	0.00202
30000	1	0.00202
32900	1	0.00202
37200	1	0.00202
38300	1	0.00202
39000	1	0.00202
39600	1	0.00202
44300	1	0.00202
46400	1	0.00202

CL117 ----> CL37

No. of shared pairs: :199

CL117 ----> CL50

No. of shared pairs: :128

CL117 ----> CL24

No. of shared pairs: :94

CL117 ----> CL47

No. of shared pairs: :88

CL117 ----> CL3

No. of shared pairs: :69

CL117 ----> CL158

No. of shared pairs: :49

CL117 ----> CL134

No. of shared pairs: :17

CL117 ----> CL5

No. of shared pairs: :16