Cluster no. 116

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Cluster is part of supercluster: 25

Cluster characteristics:

size 2346
size_real 2346
ecount 28487
supercluster 25
annotations_summary 99.53% organelle/plastid
0.13% Class_I/LINE:LINE-RH
0.04% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.935643564356436
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000426257459505541
satellite_probability 1.22924222468107e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 803
S4 762
S6 781
comparative analysis - number of edges between species:
S5 S4 S6
S5 3220 3130 3240
S4 3130 3010 3100
S6 3240 3100 3310
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.996 1.01 0.998
S4 1.010 1.00 0.990
S6 0.998 0.99 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2335 0.99531
LINE LINE-RH LINE LINE-RH 3 0.00128
Ikeros Ty1-INT Ikeros Ty1-INT 1 0.00043

clusters with similarity:

Cluster Number of similarity hits
118 22
146 4
152 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
118 23 0.324
152 13 0.23
146 12 0.19
4 1 0.000313
92 1 0.00417
94 1 0.00118
126 1 0.00543
151 1 0.00676
157 1 0.0183
7210 1 0.0244

CL116 ----> CL118

image

No. of shared pairs: :23

CL116 ----> CL152

image

No. of shared pairs: :13

CL116 ----> CL146

image

No. of shared pairs: :12