Cluster no. 115

Cluster no. 115

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Cluster is part of supercluster: 3

Cluster characteristics:

size	2369
size_real	2369
ecount	16712
supercluster	3
annotations_summary	0.04% organelle/plastid
pair_completeness	0.390258215962441
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.10806247361756
satellite_probability	5.24006036496246e-15
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	816
S4	793
S6	760

comparative analysis - number of edges between species:

	S5	S4	S6
S5	2080	1930	1900
S4	1930	1720	1760
S6	1900	1760	1720

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.992	1.010	0.999
S4	1.010	0.981	1.010
S6	0.999	1.010	0.991

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00042

clusters with similarity:

Cluster	Number of similarity hits

17	144
8	72
6	50
112	33
11	22
36	18
4	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

17	224	0.111
8	112	0.0441
112	45	0.0396
11	40	0.0151
36	31	0.0197
6	20	0.00492
260	18	0.0327
242	15	0.0266
68	14	0.00848
13	8	0.00408
4	7	0.0019
7	6	0.00225
32	5	0.00272
1	4	0.00104
30	4	0.00187
43	4	0.00293
330	4	0.00737
2	3	0.000831
58	3	0.00175
94	3	0.00226
54	2	0.00131
98	2	0.00157
153	2	0.00302
234	2	0.00359
591	2	0.00377
2070	2	0.00382
3170	2	0.00383
5220	2	0.00384
6410	2	0.00384
10100	2	0.00384
18000	2	0.00384
32100	2	0.00384
40300	2	0.00384
45000	2	0.00384
5	1	0.000366
10	1	0.000364
16	1	0.000632
28	1	0.000461
45	1	0.000654
50	1	0.000709
59	1	0.000696
61	1	0.000585
64	1	0.000636
71	1	0.000801
80	1	0.00142
81	1	0.000681
84	1	0.000818
103	1	0.000804
108	1	0.000793
121	1	0.0011
127	1	0.00145
128	1	0.00148
132	1	0.00149
151	1	0.00159
447	1	0.00187
962	1	0.00191
996	1	0.0019
2160	1	0.00191
2470	1	0.00192
2700	1	0.00192
3460	1	0.00191
4830	1	0.00192
5270	1	0.00192
6120	1	0.00192
6140	1	0.00192
7850	1	0.00192
9510	1	0.00192
9980	1	0.00192
10500	1	0.00192
10900	1	0.00192
11000	1	0.00192
11000	1	0.00192
11500	1	0.00192
12500	1	0.00192
13000	1	0.00192
15400	1	0.00192
19100	1	0.00192
20500	1	0.00192
23600	1	0.00192
23900	1	0.00192
25400	1	0.00192
26400	1	0.00192
27000	1	0.00192
27200	1	0.00192
28500	1	0.00192
28800	1	0.00192
29400	1	0.00192
30200	1	0.00192
30200	1	0.00192
31800	1	0.00192
32100	1	0.00192
32600	1	0.00192
37000	1	0.00192
37300	1	0.00192
38800	1	0.00192
39500	1	0.00192
41100	1	0.00192
47400	1	0.00192

CL115 ----> CL17

No. of shared pairs: :224

CL115 ----> CL8

No. of shared pairs: :112

CL115 ----> CL112

No. of shared pairs: :45

CL115 ----> CL11

No. of shared pairs: :40

CL115 ----> CL36

No. of shared pairs: :31

CL115 ----> CL6

No. of shared pairs: :20

CL115 ----> CL260

No. of shared pairs: :18

CL115 ----> CL242

No. of shared pairs: :15

CL115 ----> CL68

No. of shared pairs: :14