Cluster no. 114

Cluster no. 114

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Cluster is part of supercluster: 9

Cluster characteristics:

size	2412
size_real	2412
ecount	14065
supercluster	9
annotations_summary	0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
pair_completeness	0.619879113498993
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000414593698175788
satellite_probability	5.75854876097884e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	818
S4	781
S6	813

comparative analysis - number of edges between species:

	S5	S4	S6
S5	1590	1500	1570
S4	1500	1520	1540
S6	1570	1540	1740

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.030	0.991	0.978
S4	0.991	1.030	0.982
S6	0.978	0.982	1.040

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 2 0.00083

CRM Ty3-RT CRM Ty3-RT 1 0.00041

TatIII Ty3-aRH TatIII Ty3-aRH 1 0.00041

clusters with similarity:

Cluster	Number of similarity hits

15	57
52	4
66	2
76	2
28	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

15	124	0.0991
76	81	0.105
83	17	0.0124
66	10	0.0114
52	9	0.00815
28	8	0.00414
1960	6	0.0209
3960	4	0.014
6820	4	0.014
1460	3	0.0104
2150	3	0.0105
2550	3	0.0105
6520	3	0.0105
8060	3	0.0105
11500	3	0.0105
56	2	0.0014
113	2	0.00279
347	2	0.00672
388	2	0.0067
443	2	0.00687
588	2	0.00684
1730	2	0.00701
2160	2	0.00697
3170	2	0.00699
4530	2	0.00701
5640	2	0.00702
11100	2	0.00703
11500	2	0.00703
12400	2	0.00703
13500	2	0.00703
15600	2	0.00704
24900	2	0.00704
27800	2	0.00704
33400	2	0.00704
35500	2	0.00704
45200	2	0.00704
46500	2	0.00704
4	1	0.000291
7	1	0.000412
16	1	0.000743
22	1	0.000918
30	1	0.000527
35	1	0.000758
36	1	0.000746
54	1	0.000776
149	1	0.0023
218	1	0.00289
373	1	0.00331
1700	1	0.0035
2450	1	0.00353
2910	1	0.0035
3880	1	0.0035
4460	1	0.00351
4480	1	0.00351
4610	1	0.0035
6180	1	0.00352
6910	1	0.00351
7670	1	0.00353
9820	1	0.00351
10000	1	0.00353
10200	1	0.00353
11000	1	0.00351
12700	1	0.00351
13500	1	0.00351
15600	1	0.00352
16200	1	0.00352
18700	1	0.00352
19500	1	0.00352
20100	1	0.00352
20800	1	0.00352
20900	1	0.00352
26800	1	0.00352
27300	1	0.00352
27800	1	0.00352
28100	1	0.00352
28700	1	0.00352
30400	1	0.00352
30500	1	0.00352
31400	1	0.00352
34000	1	0.00352
34000	1	0.00352
34100	1	0.00352
35900	1	0.00352
37600	1	0.00352
38900	1	0.00352
39200	1	0.00352
40600	1	0.00352
41800	1	0.00352
43500	1	0.00352
44600	1	0.00352
44600	1	0.00352
46800	1	0.00352
47100	1	0.00352

CL114 ----> CL15

No. of shared pairs: :124

CL114 ----> CL76

No. of shared pairs: :81

CL114 ----> CL83

No. of shared pairs: :17

CL114 ----> CL66

No. of shared pairs: :10