Cluster no. 113

Cluster no. 113

Go back to cluster table

Cluster is part of supercluster: 9

Cluster characteristics:

size	2626
size_real	2626
ecount	42233
supercluster	9
annotations_summary	1.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.04% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.04% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.502288329519451
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0019040365575019
satellite_probability	2.60623974767306e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	918
S4	926
S6	782

comparative analysis - number of edges between species:

	S5	S4	S6
S5	4800	4950	4350
S4	4950	5320	4660
S6	4350	4660	4200

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.020	0.993	0.986
S4	0.993	1.010	0.998
S6	0.986	0.998	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00038

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00038

CRM Ty3-GAG CRM Ty3-GAG 3 0.00114

Reina Ty3-GAG Reina Ty3-GAG 3 0.00114

Tekay Ty3-GAG Tekay Ty3-GAG 28 0.01066

TatV Ty3-aRH TatV Ty3-aRH 1 0.00038

clusters with similarity:

Cluster	Number of similarity hits

76	181
65	60
15	57
41	23
72	17
19	1
107	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

76	241	0.26
15	111	0.0791
65	94	0.0912
41	53	0.0348
861	6	0.0136
7	4	0.00155
9	4	0.00255
10	4	0.0015
33	4	0.00318
72	4	0.00281
679	4	0.00904
1	3	0.000799
4	3	0.000835
27	3	0.00225
34	3	0.00339
56	3	0.0019
95	3	0.00485
132	3	0.0051
1940	3	0.00683
3280	3	0.00685
10100	3	0.00687
5	2	0.000755
13	2	0.00107
19	2	0.00103
20	2	0.000962
32	2	0.00114
35	2	0.00136
36	2	0.00134
37	2	0.00142
42	2	0.00148
49	2	0.00128
57	2	0.00129
59	2	0.00148
73	2	0.00152
114	2	0.00279
142	2	0.00248
4350	2	0.00457
17800	2	0.00459
21500	2	0.00459
22000	2	0.00459
22200	2	0.00459
2	1	0.000284
8	1	0.000407
11	1	0.00039
12	1	0.000314
22	1	0.000806
24	1	0.000645
31	1	0.000629
39	1	0.000848
40	1	0.000776
45	1	0.000692
46	1	0.000605
58	1	0.000615
60	1	0.00142
61	1	0.000615
64	1	0.000672
67	1	0.00117
68	1	0.000639
79	1	0.00122
87	1	0.000975
90	1	0.00108
94	1	0.000805
96	1	0.000992
97	1	0.00113
105	1	0.00114
107	1	0.00156
121	1	0.00121
128	1	0.00169
137	1	0.00125
168	1	0.00175
178	1	0.00195
180	1	0.00181
190	1	0.00218
192	1	0.00221
194	1	0.00213
218	1	0.00201
225	1	0.00207
229	1	0.00215
235	1	0.00213
281	1	0.00219
509	1	0.00224
1620	1	0.00228
2130	1	0.00228
2310	1	0.00228
2630	1	0.00228
3200	1	0.00229
7440	1	0.00229
7640	1	0.00229
10800	1	0.00229
22100	1	0.00229
27800	1	0.00229
29600	1	0.00229
29900	1	0.00229
33800	1	0.00229
37500	1	0.00229
42300	1	0.00229
43700	1	0.00229
44100	1	0.00229
47900	1	0.00229

CL113 ----> CL76

No. of shared pairs: :241

CL113 ----> CL15

No. of shared pairs: :111

CL113 ----> CL65

No. of shared pairs: :94

CL113 ----> CL41

No. of shared pairs: :53