Cluster no. 112

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Cluster is part of supercluster: 3

Cluster characteristics:

size	2633
size_real	2633
ecount	183838
supercluster	3
annotations_summary	0.84% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 0.04% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness	0.361427094105481
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.123053551082416
satellite_probability	1.04209004110122e-14
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	858
S4	864
S6	911

comparative analysis - number of edges between species:

	S5	S4	S6
S5	18500	19300	20400
S4	19300	20500	21600
S6	20400	21600	22300

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.995	1.000
S4	0.995	1.000	1.000
S6	1.000	1.000	0.993

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 0.00038

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00038

TatV Ty3-RH TatV Ty3-RH 22 0.00836

clusters with similarity:

Cluster	Number of similarity hits

8	7300
82	2060
36	392
115	33
153	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

8	487	0.185
82	302	0.231
36	183	0.109
115	45	0.0396
11	44	0.016
17	9	0.00427
43	5	0.00342
153	5	0.00657
1460	5	0.00805
1	2	0.000508
13	2	0.000971
27	2	0.00132
42	2	0.0013
1170	2	0.00322
3560	2	0.00323
6280	2	0.00323
7130	2	0.00323
12600	2	0.00323
47500	2	0.00323
4	1	0.000265
6	1	0.00024
21	1	0.00035
32	1	0.000516
35	1	0.000605
40	1	0.00068
41	1	0.000587
46	1	0.000545
48	1	0.000724
49	1	0.000572
54	1	0.000616
56	1	0.000567
59	1	0.000652
76	1	0.000902
94	1	0.000702
111	1	0.00114
149	1	0.0013
151	1	0.00138
168	1	0.00133
194	1	0.00153
362	1	0.00157
7320	1	0.00162
11300	1	0.00162
15900	1	0.00162
25400	1	0.00162
27200	1	0.00162
28600	1	0.00162
42100	1	0.00162

CL112 ----> CL8

No. of shared pairs: :487

CL112 ----> CL82

No. of shared pairs: :302

CL112 ----> CL36

No. of shared pairs: :183

CL112 ----> CL115

No. of shared pairs: :45

CL112 ----> CL11

No. of shared pairs: :44