Cluster no. 111

Cluster no. 111

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Cluster is part of supercluster: 35

Cluster characteristics:

size	2674
size_real	2674
ecount	16499
supercluster	35
annotations_summary	31.19% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 11.82% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 9.84% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 5.50% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 3.25% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.49% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness	0.678593848085373
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00037397157816006
satellite_probability	2.29499556110385e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	897
S4	873
S6	904

comparative analysis - number of edges between species:

	S5	S4	S6
S5	1790	1820	1840
S4	1820	1890	1810
S6	1840	1810	1870

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.995	0.997	1.010
S4	0.997	1.020	0.979
S6	1.010	0.979	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 147 0.05497

CRM Ty3-INT CRM Ty3-INT 1 0.00037

Tekay Ty3-INT Tekay Ty3-INT 834 0.31189

Galadriel Ty3-PROT Galadriel Ty3-PROT 2 0.00075

Reina Ty3-PROT Reina Ty3-PROT 4 0.00150

Tekay Ty3-PROT Tekay Ty3-PROT 87 0.03254

Athila Ty3-RH Athila Ty3-RH 1 0.00037

CRM Ty3-RH CRM Ty3-RH 2 0.00075

TatV Ty3-RH TatV Ty3-RH 1 0.00037

Tekay Ty3-RH Tekay Ty3-RH 316 0.11818

CRM Ty3-RT CRM Ty3-RT 1 0.00037

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 3 0.00112

Galadriel Ty3-RT Galadriel Ty3-RT 1 0.00037

Reina Ty3-RT Reina Ty3-RT 13 0.00486

Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00037

Tekay Ty3-RT Tekay Ty3-RT 263 0.09835

clusters with similarity:

Cluster	Number of similarity hits

35	20
94	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

35	46	0.0356
94	42	0.0395
604	10	0.038
932	6	0.023
1010	5	0.0192
4260	3	0.0116
4420	3	0.0117
5460	3	0.0116
9150	3	0.0117
10	2	0.000805
11	2	0.000839
14	2	0.00142
22	2	0.00188
49	2	0.00144
3940	2	0.00774
4520	2	0.00774
9880	2	0.00777
10400	2	0.00777
12300	2	0.00777
12400	2	0.00777
19700	2	0.00778
21400	2	0.00778
23000	2	0.00778
25900	2	0.00778
27400	2	0.00778
40600	2	0.00778
1	1	0.00028
2	1	0.000299
4	1	0.000293
6	1	0.000263
7	1	0.000416
8	1	0.000439
9	1	0.00072
15	1	0.000817
16	1	0.000758
17	1	0.000573
21	1	4e-04
25	1	0.00115
32	1	0.000635
37	1	0.000815
45	1	0.00079
46	1	0.000678
56	1	0.000714
58	1	0.000692
63	1	0.000717
64	1	0.000763
65	1	0.00117
76	1	0.00134
78	1	0.00122
82	1	0.00106
84	1	0.00104
85	1	0.00187
97	1	0.00142
106	1	0.00213
112	1	0.00114
127	1	0.00236
128	1	0.00243
132	1	0.00244
140	1	0.00217
153	1	0.0025
1220	1	0.00384
2260	1	0.00388
4500	1	0.00388
4860	1	0.00388
5470	1	0.00389
5860	1	0.00389
6860	1	0.00388
7520	1	0.0039
7790	1	0.00388
8120	1	0.00388
8440	1	0.0039
8470	1	0.00388
9550	1	0.00388
11000	1	0.0039
11100	1	0.00388
11700	1	0.00388
11700	1	0.00388
12500	1	0.00388
12800	1	0.0039
13500	1	0.00388
13700	1	0.00388
14000	1	0.00389
14200	1	0.00389
15700	1	0.00389
15800	1	0.00389
19600	1	0.00389
19700	1	0.00389
20400	1	0.00389
20600	1	0.00389
21000	1	0.00389
26700	1	0.00389
28800	1	0.00389
30500	1	0.00389
31100	1	0.00389
31200	1	0.00389
31600	1	0.00389
32700	1	0.00389
33900	1	0.00389
34000	1	0.00389
34000	1	0.00389
34500	1	0.00389
39900	1	0.00389
40500	1	0.00389
42000	1	0.00389
42900	1	0.00389
46900	1	0.00389
47100	1	0.00389

CL111 ----> CL35

No. of shared pairs: :46

CL111 ----> CL94

No. of shared pairs: :42

CL111 ----> CL604

No. of shared pairs: :10