Cluster no. 108

Cluster no. 108

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	2845
size_real	2845
ecount	181033
supercluster	1
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.314695009242144
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00246045694200351
satellite_probability	1.14260235015906e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	977
S4	933
S6	935

comparative analysis - number of edges between species:

	S5	S4	S6
S5	20600	21000	19400
S4	21000	21500	19800
S6	19400	19800	18400

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1	1.000	1.000
S4	1	1.000	0.998
S6	1	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-INT Tekay Ty3-INT 1 0.00035

clusters with similarity:

Cluster	Number of similarity hits

21	4590
4	3480
6	1840
31	26
51	18
71	11
26	1
49	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	634	0.212
6	619	0.145
4	90	0.0231
1	19	0.00468
29	5	0.0017
26	4	0.00144
31	4	0.00211
71	4	0.00272
32	3	0.00146
7	2	0.000692
10	2	0.000673
15	2	0.00117
83	2	0.00109
103	2	0.00136
44300	2	0.00269
2	1	0.000261
5	1	0.000338
11	1	0.000348
12	1	0.000287
13	1	0.000458
14	1	0.000527
16	1	0.000554
19	1	0.000444
23	1	0.000324
30	1	0.000424
36	1	0.000556
38	1	0.000791
49	1	0.000534
55	1	0.000568
56	1	0.00053
59	1	0.000603
62	1	0.000805
109	1	0.000743
115	1	0.000793
132	1	0.00112
146	1	0.00131
148	1	0.00131
164	1	0.00112
170	1	0.0012
242	1	0.00127
6510	1	0.00134
11700	1	0.00135
12600	1	0.00135
15600	1	0.00135
29200	1	0.00135
39300	1	0.00135
39500	1	0.00135

CL108 ----> CL21

No. of shared pairs: :634

CL108 ----> CL6

No. of shared pairs: :619

CL108 ----> CL4

No. of shared pairs: :90

CL108 ----> CL1

No. of shared pairs: :19