Cluster no. 107

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Cluster is part of supercluster: 28

Cluster characteristics:

size 2862
size_real 2862
ecount 53774
supercluster 28
annotations_summary
pair_completeness 0.75045871559633
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.245047688921497
satellite_probability 9.56147118925529e-12
consensus None
TAREAN_annotation Other
orientation_score 0.991804720199782

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 909
S4 978
S6 975
comparative analysis - number of edges between species:
S5 S4 S6
S5 5800 6510 5670
S4 6510 7540 6620
S6 5670 6620 5920
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 0.996 0.984
S4 0.996 1.000 1.000
S6 0.984 1.000 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
155 32
192 5
20 1
65 1
113 1
263 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
155 43 0.175
192 27 0.122
263 9 0.0425
566 6 0.0284
1 5 0.00142
9 5 0.00374
513 5 0.0231
2000 5 0.024
3390 5 0.0242
4 4 0.00119
6 4 0.00107
25 4 0.00489
27 4 0.00363
58 4 0.00287
65 4 0.005
680 4 0.0192
2 3 0.00091
22 3 0.00297
29 3 0.00125
40 3 0.00284
53 3 0.00395
85 3 0.00621
2980 3 0.0146
5800 3 0.0146
10300 3 0.0146
7 2 0.000851
11 2 0.000857
12 2 0.000678
19 2 0.00117
20 2 0.00108
59 2 0.00178
79 2 0.00338
522 2 0.00962
862 2 0.00969
1500 2 0.00964
1940 2 0.00959
2120 2 0.00971
6120 2 0.00976
31600 2 0.00976
32400 2 0.00976
34200 2 0.00976
42100 2 0.00976
5 1 0.000414
10 1 0.000411
13 1 0.000607
14 1 0.000736
15 1 0.000853
17 1 0.00059
21 1 0.000409
28 1 0.000539
30 1 0.00055
33 1 0.000973
34 1 0.00153
39 1 0.00105
42 1 0.000893
43 1 0.000955
47 1 0.00101
51 1 0.000813
52 1 0.000975
56 1 0.000741
57 1 0.000756
61 1 0.000717
63 1 0.000744
66 1 0.00125
68 1 0.000749
72 1 0.000837
73 1 0.000919
75 1 0.0014
77 1 0.000991
82 1 0.00112
83 1 0.000771
90 1 0.00145
96 1 0.00129
113 1 0.00156
117 1 0.00143
143 1 0.00255
161 1 0.00372
515 1 0.00478
667 1 0.00468
1560 1 0.00478
1570 1 0.00481
1810 1 0.00484
2240 1 0.00483
2720 1 0.00487
3090 1 0.00485
3110 1 0.00485
3490 1 0.00485
3750 1 0.00484
4030 1 0.00487
4290 1 0.00484
4660 1 0.00487
5280 1 0.00488
5420 1 0.00485
5520 1 0.00488
6790 1 0.00488
6980 1 0.00488
7900 1 0.00489
8730 1 0.00487
9010 1 0.00487
9160 1 0.00487
11200 1 0.00487
11400 1 0.00487
22100 1 0.00488
25000 1 0.00488
31000 1 0.00488
31700 1 0.00488
35900 1 0.00488
36400 1 0.00488
41000 1 0.00488
44600 1 0.00488
45200 1 0.00488

CL107 ----> CL155

image

No. of shared pairs: :43

CL107 ----> CL192

image

No. of shared pairs: :27