Cluster no. 105

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3008
size_real	3008
ecount	173523
supercluster	2
annotations_summary	32.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 4.22% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.33% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
pair_completeness	0.548121461657231
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000997340425531915
satellite_probability	1.46614129999921e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1040
S4	1010
S6	962

comparative analysis - number of edges between species:

	S5	S4	S6
S5	21300	20800	18900
S4	20800	19900	18200
S6	18900	18200	16500

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.996	1.000	1.000
S4	1.000	0.995	1.000
S6	1.000	1.000	0.996

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 1 0.00033

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00033

CRM Ty3-GAG CRM Ty3-GAG 127 0.04222

Galadriel Ty3-GAG Galadriel Ty3-GAG 1 0.00033

Reina Ty3-GAG Reina Ty3-GAG 10 0.00332

Tekay Ty3-GAG Tekay Ty3-GAG 988 0.32846

Tekay Ty3-INT Tekay Ty3-INT 1 0.00033

clusters with similarity:

Cluster	Number of similarity hits

7	5450
70	1720
181	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	411	0.159
70	337	0.366
97	6	0.00676
19	2	0.00103
32	2	0.00114
56	2	0.00126
61	2	0.00123
101	2	0.00229
3	1	0.00038
10	1	0.000375
44	1	0.00104
46	1	0.000604
48	1	0.000832
59	1	0.000738
83	1	0.000653
87	1	0.000971
113	1	0.00114
117	1	0.00107
127	1	0.00165
181	1	0.00193
1190	1	0.00225
7850	1	0.00227
8130	1	0.00227
42900	1	0.00227
45400	1	0.00227

CL105 ----> CL7

No. of shared pairs: :411

CL105 ----> CL70

No. of shared pairs: :337