Cluster no. 104

Cluster no. 104

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Cluster is part of supercluster: 3

Cluster characteristics:

size	3031
size_real	3031
ecount	186942
supercluster	3
annotations_summary	0.63% organelle/mitochondria 0.03% Class_I/LINE:LINE-ENDO
pair_completeness	0.392922794117647
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0616958099637083
satellite_probability	9.60734271222232e-18
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1020
S4	998
S6	1010

comparative analysis - number of edges between species:

	S5	S4	S6
S5	20200	20300	21100
S4	20300	20100	21000
S6	21100	21000	21900

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.995	1.000	1.000
S4	1.000	0.997	0.999
S6	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 19 0.00627

LINE LINE-ENDO LINE LINE-ENDO 1 0.00033

clusters with similarity:

Cluster	Number of similarity hits

56	1600
54	117
81	93
49	87
16	30
182	30
2	14
119	10
94	6
11	2
13	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

56	460	0.255
49	213	0.119
81	80	0.0497
182	68	0.0881
54	41	0.0246
16	37	0.0215
2	29	0.00773
11	18	0.00645
366	9	0.0132
119	7	0.00631
224	5	0.00708
10	4	0.00138
94	4	0.00273
7	3	0.00107
13	3	0.00143
32	3	0.00152
1	2	0.000502
30	2	0.000879
45	2	0.0012
58	2	0.00108
1350	2	0.00301
8740	2	0.00302
9820	2	0.00302
11600	2	0.00302
14800	2	0.00302
21500	2	0.00302
27700	2	0.00302
4	1	0.000262
8	1	0.000373
9	1	0.000557
17	1	0.000465
19	1	0.000461
37	1	0.000613
41	1	0.000572
47	1	0.000689
53	1	0.000823
62	1	0.000861
63	1	0.000556
68	1	0.000558
83	1	0.00057
134	1	0.00108
136	1	0.00125
137	1	0.000973
142	1	0.00097
153	1	0.00124
229	1	0.00145
1170	1	0.0015
1810	1	0.00151
1980	1	0.00151
3500	1	0.00151
6820	1	0.00151
8500	1	0.00151
10200	1	0.00151
10800	1	0.00151
14800	1	0.00151
15900	1	0.00151
23800	1	0.00151
25200	1	0.00151
28000	1	0.00151
30800	1	0.00151
32700	1	0.00151
40200	1	0.00151
46300	1	0.00151

CL104 ----> CL56

No. of shared pairs: :460

CL104 ----> CL49

No. of shared pairs: :213

CL104 ----> CL81

No. of shared pairs: :80

CL104 ----> CL182

No. of shared pairs: :68

CL104 ----> CL54

No. of shared pairs: :41

CL104 ----> CL16

No. of shared pairs: :37

CL104 ----> CL2

No. of shared pairs: :29

CL104 ----> CL11

No. of shared pairs: :18