Cluster no. 103

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Cluster is part of supercluster: 6

Cluster characteristics:

size 3082
size_real 3082
ecount 231806
supercluster 6
annotations_summary 0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.06% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.360105913503972
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00259571706683971
satellite_probability 8.64114621709583e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 1020
S4 1040
S6 1020
comparative analysis - number of edges between species:
S5 S4 S6
S5 23700 25700 24700
S4 25700 28000 26800
S6 24700 26800 25800
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.998 1
S4 0.998 1.000 1
S6 1.000 1.000 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.00065
Ivana Ty1-RT Ivana Ty1-RT 2 0.00065
SIRE Ty1-RT SIRE Ty1-RT 1 0.00032
TatV Ty3-GAG TatV Ty3-GAG 1 0.00032
Tekay Ty3-INT Tekay Ty3-INT 1 0.00032

clusters with similarity:

Cluster Number of similarity hits
88 1430
66 267
92 150
15 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
66 414 0.313
88 181 0.177
92 100 0.108
360 7 0.00949
9 6 0.00323
30 6 0.00256
57 6 0.00326
388 6 0.0081
6 5 0.00117
22 5 0.00327
28 5 0.0021
75 5 0.00405
1 4 0.000989
5 4 0.00136
23 4 0.0013
25 4 0.00299
33 4 0.00258
39 4 0.00272
40 4 0.00253
1310 4 0.00548
27 3 0.00185
42 3 0.00183
45 3 0.00173
53 3 0.00234
76 3 0.00247
206 3 0.00384
671 3 0.0041
3330 3 0.00412
3400 3 0.00412
4800 3 0.00413
5060 3 0.00413
3 2 0.000686
8 2 0.000728
12 2 0.000576
14 2 0.00106
15 2 0.00118
20 2 0.000844
24 2 0.00109
26 2 0.000723
34 2 0.0017
38 2 0.0016
41 2 0.0011
58 2 0.00104
67 2 0.00175
90 2 0.00165
97 2 0.0017
108 2 0.00136
110 2 0.00141
164 2 0.00228
190 2 0.00267
614 2 0.00272
1790 2 0.00275
2490 2 0.00275
3880 2 0.00275
4500 2 0.00275
6760 2 0.00275
12500 2 0.00275
13900 2 0.00275
14600 2 0.00275
17600 2 0.00275
31300 2 0.00275
32500 2 0.00275
7 1 0.000348
10 1 0.000339
19 1 0.000448
21 1 0.000337
35 1 0.000568
51 1 0.000571
52 1 0.000647
56 1 0.000535
59 1 0.000609
62 1 0.000815
71 1 0.000688
74 1 0.000994
77 1 0.000653
78 1 0.000778
79 1 0.000899
82 1 0.000706
83 1 0.00055
85 1 0.000996
87 1 0.00076
91 1 0.0013
94 1 0.000653
102 1 0.000785
106 1 0.00106
115 1 0.000804
119 1 0.000851
122 1 0.000896
123 1 0.00118
125 1 0.000969
133 1 0.00114
140 1 0.00108
142 1 0.000913
147 1 0.00103
149 1 0.00114
150 1 0.00102
168 1 0.00116
183 1 0.0013
195 1 0.00126
228 1 0.00133
236 1 0.00132
240 1 0.00133
258 1 0.00134
346 1 0.00135
378 1 0.00135
453 1 0.00135
870 1 0.00137
1260 1 0.00137
1370 1 0.00137
1640 1 0.00137
1960 1 0.00137
2020 1 0.00137
3340 1 0.00137
4140 1 0.00138
4830 1 0.00138
5180 1 0.00138
5380 1 0.00138
5640 1 0.00138
6050 1 0.00138
6280 1 0.00138
7330 1 0.00138
8990 1 0.00138
9290 1 0.00138
9600 1 0.00138
9790 1 0.00138
10300 1 0.00138
10800 1 0.00138
11700 1 0.00138
12000 1 0.00138
12100 1 0.00138
12600 1 0.00138
12800 1 0.00138
13100 1 0.00138
14000 1 0.00138
15500 1 0.00138
16000 1 0.00138
16300 1 0.00138
16600 1 0.00138
16800 1 0.00138
17300 1 0.00138
18300 1 0.00138
19200 1 0.00138
20400 1 0.00138
20700 1 0.00138
24700 1 0.00138
26700 1 0.00138
27000 1 0.00138
27000 1 0.00138
27500 1 0.00138
27600 1 0.00138
30200 1 0.00138
30700 1 0.00138
31400 1 0.00138
31800 1 0.00138
33300 1 0.00138
33400 1 0.00138
34000 1 0.00138
35600 1 0.00138
36300 1 0.00138
36600 1 0.00138
38800 1 0.00138
39400 1 0.00138
39600 1 0.00138
40400 1 0.00138
42700 1 0.00138
43600 1 0.00138
43900 1 0.00138
46900 1 0.00138

CL103 ----> CL66

image

No. of shared pairs: :414

CL103 ----> CL88

image

No. of shared pairs: :181

CL103 ----> CL92

image

No. of shared pairs: :100