Cluster no. 102

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3103
size_real	3103
ecount	237512
supercluster	2
annotations_summary	44.47% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 29.81% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
pair_completeness	0.477619047619048
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00193361263293587
satellite_probability	3.21043016719236e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1060
S4	980
S6	1060

comparative analysis - number of edges between species:

	S5	S4	S6
S5	27700	26000	27800
S4	26000	24100	25600
S6	27800	25600	26900

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.991	1.000	1.010
S4	1.000	1.000	0.999
S6	1.010	0.999	0.993

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-CHDII CRM Ty3-CHDII 1 0.00032

Tekay Ty3-CHDII Tekay Ty3-CHDII 925 0.29810

Reina Ty3-GAG Reina Ty3-GAG 2 0.00064

Reina Ty3-INT Reina Ty3-INT 1 0.00032

Tekay Ty3-INT Tekay Ty3-INT 1380 0.44473

chromo-outgroup Ty3-INT chromo-outgroup Ty3-INT 1 0.00032

clusters with similarity:

Cluster	Number of similarity hits

101	4260
32	3190
48	142
13	20
67	9

clusters connected through mates:

Cluster	Number of shared read pairs	k

32	491	0.263
101	386	0.393
48	96	0.0732
13	9	0.00452
97	7	0.00702
1	3	0.000775
15	3	0.00198
70	3	0.00291
7	2	0.000742
10	2	0.00072
16	1	0.00062
26	1	0.000386
29	1	0.000364
45	1	0.000642
62	1	0.000952
67	1	0.00103
80	1	0.00137
84	1	0.000799
94	1	0.000738
103	1	0.000785
126	1	0.00144
143	1	0.00136
3090	1	0.00182
3550	1	0.00182
9350	1	0.00182
31100	1	0.00182
40100	1	0.00182

CL102 ----> CL32

No. of shared pairs: :491

CL102 ----> CL101

No. of shared pairs: :386

CL102 ----> CL48

No. of shared pairs: :96