Cluster no. 101

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3183
size_real	3183
ecount	453462
supercluster	2
annotations_summary	92.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 1.48% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.16% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-INT
pair_completeness	0.571851851851852
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00157084511467169
satellite_probability	1.13992396794032e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1120
S4	1010
S6	1060

comparative analysis - number of edges between species:

	S5	S4	S6
S5	53400	49700	52500
S4	49700	46700	49000
S6	52500	49000	51200

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	0.996	1.000
S4	0.996	1.000	1.000
S6	1.000	1.000	0.996

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-INT CRM Ty3-INT 5 0.00157

Reina Ty3-INT Reina Ty3-INT 47 0.01477

Tekay Ty3-INT Tekay Ty3-INT 2944 0.92491

chromo-outgroup Ty3-INT chromo-outgroup Ty3-INT 1 0.00031

clusters with similarity:

Cluster	Number of similarity hits

97	8350
102	4260
67	73
27	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

97	389	0.441
102	386	0.393
7	4	0.00155
70	3	0.00328
1	2	0.000533
5	2	0.000756
26	2	0.000809
30	2	0.000976
53	2	0.00202
56	2	0.00127
58	2	0.00123
60	2	0.00286
67	2	0.00235
84	2	0.00176
105	2	0.00229
132	2	0.00341
2	1	0.000284
3	1	0.000381
13	1	0.000533
18	1	0.000605
19	1	0.000515
40	1	0.000777
44	1	0.00104
54	1	0.000695
62	1	0.00107
63	1	0.000636
78	1	0.00101
85	1	0.0014
94	1	0.000806
152	1	0.00222
164	1	0.00171
173	1	0.00173
979	1	0.00229

CL101 ----> CL97

No. of shared pairs: :389

CL101 ----> CL102

No. of shared pairs: :386