Cluster no. 99

Cluster no. 99

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	3373
size_real	3373
ecount	106120
supercluster	1
annotations_summary	0.15% organelle/plastid 0.03% organelle/mitochondria
pair_completeness	0.434098639455782
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.362288763711829
satellite_probability	5.97868603318471e-08
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	1150
S4	1100
S6	1130

comparative analysis - number of edges between species:

	S5	S4	S6
S5	11400	11600	11900
S4	11600	11600	11900
S6	11900	11900	12200

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.99	1.010	1.000
S4	1.01	0.996	0.998
S6	1.00	0.998	0.997

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.0003

plastid plastid 5 0.0015

clusters with similarity:

Cluster	Number of similarity hits

46	2640
55	1260
29	1
61	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	402	0.213
55	193	0.115
23	9	0.00299
29	7	0.00244
10	6	0.00207
656	5	0.00745
647	4	0.00596
1940	4	0.00599
2710	4	0.00599
71	3	0.00215
218	3	0.00412
2030	3	0.00449
5020	3	0.00449
9370	3	0.0045
1	2	0.000502
32	2	0.00101
50	2	0.00129
85	2	0.00212
156	2	0.0023
978	2	0.00299
1870	2	0.00299
4400	2	0.003
4930	2	0.003
5000	2	0.003
11400	2	0.003
11500	2	0.003
12100	2	0.003
13200	2	0.003
15800	2	0.003
26200	2	0.003
30800	2	0.003
34700	2	0.003
38000	2	0.003
38700	2	0.003
40500	2	0.003
41300	2	0.003
45800	2	0.003
3	1	0.00035
6	1	0.000238
7	1	0.000356
9	1	0.000556
14	1	0.000549
16	1	0.000578
19	1	0.00046
25	1	0.000782
35	1	0.000588
38	1	0.000842
40	1	0.000659
41	1	0.00057
44	1	0.000839
49	1	0.000556
56	1	0.000552
57	1	0.000561
62	1	0.000857
63	1	0.000554
64	1	0.000582
69	1	0.000752
81	1	0.00062
90	1	0.000867
94	1	0.000679
97	1	0.000898
109	1	0.000787
135	1	0.00121
142	1	0.000966
220	1	0.00139
1530	1	0.0015
2700	1	0.0015
3480	1	0.0015
3550	1	0.0015
4110	1	0.0015
4830	1	0.0015
5270	1	0.0015
6210	1	0.0015
6230	1	0.0015
6890	1	0.0015
6940	1	0.0015
8190	1	0.0015
9920	1	0.0015
9940	1	0.0015
10300	1	0.0015
10900	1	0.0015
11700	1	0.0015
12100	1	0.0015
12100	1	0.0015
12600	1	0.0015
13000	1	0.0015
15300	1	0.0015
15500	1	0.0015
17100	1	0.0015
17600	1	0.0015
17800	1	0.0015
17900	1	0.0015
19100	1	0.0015
19700	1	0.0015
19900	1	0.0015
22100	1	0.0015
22400	1	0.0015
22500	1	0.0015
22700	1	0.0015
24900	1	0.0015
25200	1	0.0015
26100	1	0.0015
26300	1	0.0015
26600	1	0.0015
29000	1	0.0015
29400	1	0.0015
29700	1	0.0015
30400	1	0.0015
31500	1	0.0015
32300	1	0.0015
33000	1	0.0015
34100	1	0.0015
34500	1	0.0015
35400	1	0.0015
35600	1	0.0015
37000	1	0.0015
37300	1	0.0015
37400	1	0.0015
38800	1	0.0015
38800	1	0.0015
39200	1	0.0015
41500	1	0.0015
43900	1	0.0015
44200	1	0.0015
44800	1	0.0015
45300	1	0.0015
45700	1	0.0015
45900	1	0.0015
46900	1	0.0015

CL99 ----> CL46

No. of shared pairs: :402

CL99 ----> CL55

No. of shared pairs: :193